RNA id: TCONS_00044829


Basic Information

Item Value
RNA id TCONS_00044829
length 4470
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id XLOC_021722
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26591124 ~ 26625133 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtatatttaatcTCGACTTAAACAGCATATGAAGCTTTTTAGTACAAGGAAGCTTCTCATTGGCTTTTTAGCAAGGAAAATGAAGTTCATCCCAATTACACCAGTATGCTCCAGTATCATTGATTTACAGCGCCTGTTATGCAAGATTACAGTCAATGAAGAGTTGCTGTAAAATGCCAAGCAATAGTTTGTCACAATGACAATCAAATAGGACATTTAGTTTCCAACTGAAAAATCAATGCACATTCAGAAGACATTAAAAAATAGGTGAAGTGTAAGTTAAGCGcactgtgtaaataaaaaaaaaaaaacaaagacagtggaGAAAACAGCACTCAGGTGAAATCATGCAGCAGGTTAGTATCATAAACAACATGTAAAAGCTTTACCTTGGCATAAACATTCATATAGTATTTTCTTTGAATACAGCTTGTGATTGATAAATTGTGGATAGAGTTTCAGTTCCATTCCACAGACTGAACCtgttattcttttaatattttcaCCATATTAAGAATTTGTACATACATTTCACAGCTTAGACAAATACAAAACAATGagatcattgtaaaaaaaaatcagattttcaagATACAGCACCAtttcaaaaatgtacaaaattaaatattgctttaattaacaaaataattgaaTATACACCTACATgcttgattaataaaaataaatcaaagaaaaacagtTATACAGCACCATTTTAGTTGTAAAACATACACAATGAATaagaacaaaacataaaaatatatatttgcatgtTTGAAATTTCATACACACAACCTTAAAGCCTTAACATCCTTTCATTCGCAGTGTTTGTAAGTGTAAACcaaagttgtagttttttttttgcaatcaaaATAAATATGGTTACTAAAGTACATATCGCTGTTGGCCACAATTGAAAGCCATTATTTATGACATGTCTTTAACTACTAATACTAAAATGAGATATAACTCAAGAGCGTTGAACAGTACATAACCTAAGTAATatctactgtatatttaaaattctGAAACATATCTTACAAACAAATCCCTGCCTAAACCAATGGCAATTCATAGgacgaccaaaaaaaaaaagaaaatgtaatggaaaatatgacACTCCTGGAAAAAGTGAACATTCAAACTACTGCACTATTAATAGCACCATTTTCAAATACAAAACTGAAAAACAGTTTCATTACAAAAGCAGAGGTGGAATCCCATCTTGGAGTCGGGAACAGGATTGTGCCTGCAGTCCTTTCGGCCGATGAGCTCCAGTTTCTACCATGACACCAGTGTATTTTATGACACCTCCCTACCTCATCACCCAACAAACACCACCTCAGGAGGGAAATGACAGCAAACATGCCCAGAAATGAAGACAACTCCTCCACTAGTGAGAAGACTGACACAGAACCGCCACCATGATAACACCCAATTACACCAGCAGATGATTTCACTACGCATGAATTAGATGCATTTACAACTAAAGGTTAGTAAAATGACTAGGATTTATTCTGTGCAAAATGTACATTGATCTAGTTTTATGTAATGTAGCTCAAATTCAATTCAATGCAATCATTTGTGTATTTTGCAAAAGGttttataaagaaataaacaagctCATTTTAACAATGACAGtaacaataaaagcaatattgTGTAAATGATTAGTCAAATCAAACTGAGGTCAAATGTAGCATTCTTATACAGCTATAAAGCATTCATGAACTATTTGTTCAAAATATGTTGTGCTCATTTCTATTCGATTCCAACAAAAAATCATAAGCATTGCAAAATATAtcaaatgtttattataaatcgCTTCAGACTTCATCACTTCAGTTCTTTTAACTTTTGGTATATATTCAACCAAATGTGAATCATGGGAATAATATATGTGATGGATTGAAATTGGTTTGGATAAAATATATAATGATTGCAGGATTTGAATGGTGAAGTGTTTTCTTTGAATtgcaaatttctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagctttcatatTAACCCTACTCAAGCTTGATCATTACGTCTAGTGTAAAGATTTTACACTGACAACTAGAGAAGTCACTGAAGATGTTTGATTAAATCTGACGTCAGTCTTCATGGGAGTCTACTCTTTGATATGCGAGTCACATAACAAAATGAGCATCATGGGAATTTATTCGAAGTCCTAATTTAAGATGATTGAAACTTCTAATggcaatgaataaaaaaaaacgctTCACAATCAAACTATAGCTAACGCTGTTGTGACGCATGATGCTGGTTGGTTTACTTTGATTACAAATTATAGATCCAAGTTTCATTTTTCTTATAAATCCTTCACAAGCCTGATCATTTTGTTGTaggaaatgtgaaaaaaatatatacatggcTTCAGTCTTCATGGGAGTCTATTTTTGATATGAGagtcacataaaaaaaataaaaataaaaaaaaaatcaaagaaaaccAAAGTCTAAATTTCGAATGACAATGACTCAAAAATGCTTCAAAATCAAAATATAACTGAAACAGTTTGTGCTGAGAAACATCAAAAGATTTCTGATGctggttgtttttttctttaaatacaaattGTATATTTAACTTTCTTTATATACCATTCACAAGCCTGATCATTTTGCCATAAAAATGTGAGAAAAAACTAATTTATGGCTTCAGGCTTCATAGAAGTCTGTTTTTGATACAGTATGTGAGTCGCATAACAAAACGAGCATCATAGGAATTTATTTAAAAGCCCTAAATTTAGAGGATTGAAAGCAAAGTCTATTTTTCTAATGGCAATGACTCAAAAATGCTTCAAAATCAAATTACGGCTGAAGCAGTTTGTGTTGAGAAACATCAAATGATTTCACATGTTggttggtattttttttttcattacaaaatTTTCCATCCAagtttaacttttattattaactatttagTTGTCTGATCATTTTGCCATAGAAAATTTGAGAAAAACTAATATATGGCGTCAGTCTTCTTGAGAGTCTGTTCATTGATATGAGAGTCATATCACAAAACAAGCATCATAGGAATTTATTCAAACGCCTAAATTTAGAGGATTGAAAGGAAAGTCTAAATTTCTAATGGcatctaatttctaattttaaaTGGCAATGATACAAAAATGCTTCAAAATCAAATTATAGTTGAAACATTTtctgttgagaaaaaaaatgattgCAGATGCTGGCTTTTATTTTCTTTGATTACAAAATTGTATATCTCacttttttataaaccatttacaAGCCTGATCATTTTGGCATTAAAAAATGtggagataaaaaaaatatatatggcaTCAGTCTTCATGGAAGTCTGTTTTTTGATATGTGAGTCACATAACAAAATGAGCATCATGGGAATTAAGTCCTAAATTAAGAGGATTGAAAAGCAAAGTCTAAATTTCTAATGGCAATGACTCAAAATTGCTTCAAATAGAAATTATTGCTGAAACAGTTTGTGTTGTGAAACATCAAATGATTTCAGATGCTGGCTGGTATTTTCTttgattataaaattaaatatccaAGATTTACTTTCATTATTAATCGTTCACAACCCTGATCATTTTGCCATAGAATATGTGACGAAAAACTAATATAAGGCGTCAGTCTTCACAGGAGTCTGTTTTATACACCGCTGgtgttgtttttgcattgatTAAGATCATTGAAAATTAGTCTAATTTCCAACATAAATAACCCCAACATTTTGAAATCATAACCTGTAATACTATTTGTTAACATAGGAAAAAACAAATGATCACAAATTTGTtttaagacaataaaataaatgaatttcagGTGCTGGATTGGAAGTTTGATTACAAAATAATTTCACTTTTTCTATGAACCATTCACAAGCTGTATCACACTGACGTAAAGATTTTACACTGGCAACATGAGTAGCCATTCAGTTAACCGTAAGCGTTACAAAAACATCTCAGCAAATaatcaaaaagcttttttttttttgattaacgcaataatttaaacaaaaagcaAGATTAGCCATGCTGTTTGTCCATAACATAGAGCAAAATTTTgtgcgcacacacaaaaaaaaacaggacaaaggAGAAAAGCAGAAAGTCATGCAGCAAGATAACAAAAAAAGACAGAAGAACTAAAAGGCAGGGAGGTTTAGAGGATGTGGTGCCAGTCACAAACCTGGGACATAGAGGACAGCGCTGCCCTCGTCCATGCCCAACATATTGGAGCCTGTGCAAACATAGATGCCTGCATCCTCCGGCTGCACGTTCTGAATGGTCAGGATGCCATTGAAATCCATGGCTCGGTTGGGCAGCTTGCCGTTGCCTTTGCGGGTCCAAACCAGGGTGTAAGCTGGAAGGTCCAGAGTATCCTTGAGGACAGGCACACTCCTCCACCTCCATAGCCCTCTCATTTCCTGTAGAATGAGGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043093 lncRNA upstream 719750 25869374 ~ 25871801 (+) True XLOC_021711
TCONS_00043090 lncRNA upstream 734268 25856670 ~ 25857283 (+) False XLOC_021710
TCONS_00044827 lncRNA upstream 1284948 25305436 ~ 25306603 (+) True XLOC_021705
TCONS_00043076 lncRNA upstream 1295737 25291955 ~ 25295814 (+) False XLOC_021704
TCONS_00043067 lncRNA upstream 1445138 25139391 ~ 25146413 (+) True XLOC_021700
TCONS_00044832 lncRNA downstream 883734 27508867 ~ 27512102 (+) False XLOC_021731
TCONS_00044833 lncRNA downstream 883737 27508870 ~ 27516273 (+) True XLOC_021731
TCONS_00043124 lncRNA downstream 1078621 27703754 ~ 27719163 (+) True XLOC_021734
TCONS_00044834 lncRNA downstream 1245606 27870739 ~ 27872705 (+) True XLOC_021738
TCONS_00044835 lncRNA downstream 1514626 28139759 ~ 28160364 (+) False XLOC_021742
TCONS_00043109 mRNA upstream 89030 26491931 ~ 26502521 (+) False XLOC_021721
TCONS_00043110 mRNA upstream 93109 26491995 ~ 26498442 (+) True XLOC_021721
TCONS_00043108 mRNA upstream 411012 26142807 ~ 26180539 (+) True XLOC_021720
TCONS_00043107 mRNA upstream 436868 26142613 ~ 26154683 (+) False XLOC_021720
TCONS_00043106 mRNA upstream 488756 26102028 ~ 26102795 (+) True XLOC_021719
TCONS_00043111 mRNA downstream 108099 26733232 ~ 26751278 (+) True XLOC_021723
TCONS_00043113 mRNA downstream 321296 26946429 ~ 26951009 (+) False XLOC_021725
TCONS_00043114 mRNA downstream 321611 26946744 ~ 26959206 (+) True XLOC_021725
TCONS_00043116 mRNA downstream 354041 26979174 ~ 27006062 (+) True XLOC_021726
TCONS_00043117 mRNA downstream 426786 27051919 ~ 27059998 (+) True XLOC_021727
TCONS_00043098 other upstream 596410 25995027 ~ 25995141 (+) True XLOC_021714
TCONS_00043095 other upstream 694542 25879768 ~ 25897009 (+) False XLOC_021712
TCONS_00043088 other upstream 727585 25856629 ~ 25863966 (+) False XLOC_021710
TCONS_00043091 other upstream 729254 25861398 ~ 25862297 (+) True XLOC_021710
TCONS_00043063 other upstream 1606693 24983302 ~ 24984858 (+) True XLOC_021698
TCONS_00043112 other downstream 303610 26928743 ~ 26928858 (+) True XLOC_021724
TCONS_00043115 other downstream 354041 26979174 ~ 27003981 (+) False XLOC_021726
TCONS_00043140 other downstream 1515184 28140317 ~ 28148953 (+) True XLOC_021742
TCONS_00043142 other downstream 1697947 28323080 ~ 28325841 (+) False XLOC_021743
TCONS_00043158 other downstream 1911228 28536361 ~ 28536457 (+) True XLOC_021747