RNA id: TCONS_00043090


Basic Information

Item Value
RNA id TCONS_00043090
length 339
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_021710
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 25832689 ~ 25865856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACATGGAGATGGCAGACTATAGCGAGGCCTTGGATCCAGCCTACACCACGCTGGAGTTTGAAAACATGCAAGTGCTTGCGATGAGCACAGCTGGCTTGGGATAAAATGACTTGTTTGGATAGTATTTCAAGAAGAAGTTTGACACCAGGATGAATGATTACTAGAAGAAGAGGGTGTCATGTAAATGTTTCGCAGCCAATCCTCCCATGTCTAAGTTTTGTGCAACAAATTGATATTCAACCGGTGTCAACCTGACACAAGTAATTTAATATGAATGGTAAGGTTATATTTAAAGTTTAAGTAAAGCAATAAGAGTccagtttaaaaaatgtttacat

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0009617 response to bacterium biological_process
GO:0048856 anatomical structure development biological_process
GO:0070365 hepatocyte differentiation biological_process
GO:0055088 lipid homeostasis biological_process
GO:1990798 pancreas regeneration biological_process
GO:0050796 regulation of insulin secretion biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0003323 type B pancreatic cell development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04152 AMPK signaling pathway
ko04950 Maturity onset diabetes of the young
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-030131-1077 Enables DNA-binding transcription factor activity. Acts upstream of or within pancreas regeneration; response to bacterium; and type B pancreatic cell development. Predicted to be located in nucleus. Is expressed in gut; intestinal bulb primordium; liver; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Fanconi renotubular syndrome 4; familial combined hyperlipidemia; hypoglycemia; maturity-onset diabetes of the young type 1; and type 2 diabetes mellitus. Orthologous to human HNF4A (hepatocyte nuclear factor 4 alpha).

Ensembl:

ensembl_id ENSDART00000139049

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044827 lncRNA upstream 550067 25305436 ~ 25306603 (+) True XLOC_021705
TCONS_00043076 lncRNA upstream 560856 25291955 ~ 25295814 (+) False XLOC_021704
TCONS_00043067 lncRNA upstream 710257 25139391 ~ 25146413 (+) True XLOC_021700
TCONS_00043052 lncRNA upstream 1247467 24606253 ~ 24609203 (+) False XLOC_021693
TCONS_00043047 lncRNA upstream 1252802 24599057 ~ 24603868 (+) False XLOC_021693
TCONS_00043093 lncRNA downstream 12091 25869374 ~ 25871801 (+) True XLOC_021711
TCONS_00044828 lncRNA downstream 733841 26591124 ~ 26595947 (+) False XLOC_021722
TCONS_00044829 lncRNA downstream 734268 26591551 ~ 26625133 (+) False XLOC_021722
TCONS_00044830 lncRNA downstream 734330 26591613 ~ 26595947 (+) False XLOC_021722
TCONS_00044831 lncRNA downstream 734409 26591692 ~ 26599411 (+) True XLOC_021722
TCONS_00043084 mRNA upstream 29300 25821055 ~ 25827370 (+) False XLOC_021709
TCONS_00043085 mRNA upstream 29677 25822742 ~ 25826993 (+) True XLOC_021709
TCONS_00043083 mRNA upstream 87905 25708787 ~ 25768765 (+) True XLOC_021708
TCONS_00043080 mRNA upstream 407798 25354856 ~ 25448872 (+) False XLOC_021707
TCONS_00043082 mRNA upstream 407798 25428513 ~ 25448872 (+) True XLOC_021707
TCONS_00043092 mRNA downstream 11354 25868637 ~ 25874877 (+) False XLOC_021711
TCONS_00043094 mRNA downstream 22037 25879320 ~ 25942859 (+) False XLOC_021712
TCONS_00043096 mRNA downstream 35737 25893020 ~ 25942859 (+) True XLOC_021712
TCONS_00043097 mRNA downstream 136403 25993686 ~ 26003858 (+) False XLOC_021713
TCONS_00043099 mRNA downstream 138444 25995727 ~ 25998246 (+) False XLOC_021713
TCONS_00043063 other upstream 871812 24983302 ~ 24984858 (+) True XLOC_021698
TCONS_00043051 other upstream 1250296 24606237 ~ 24606374 (+) False XLOC_021693
TCONS_00043045 other upstream 1252252 24598997 ~ 24604418 (+) False XLOC_021693
TCONS_00043042 other upstream 1295797 24556455 ~ 24560873 (+) True XLOC_021691
TCONS_00043041 other upstream 1349389 24501965 ~ 24507281 (+) True XLOC_021690
TCONS_00043091 other downstream 4115 25861398 ~ 25862297 (+) True XLOC_021710
TCONS_00043095 other downstream 22485 25879768 ~ 25897009 (+) False XLOC_021712
TCONS_00043098 other downstream 137744 25995027 ~ 25995141 (+) True XLOC_021714
TCONS_00043112 other downstream 1071460 26928743 ~ 26928858 (+) True XLOC_021724
TCONS_00043115 other downstream 1121891 26979174 ~ 27003981 (+) False XLOC_021726

Expression Profile

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