RNA id: TCONS_00043135


Basic Information

Item Value
RNA id TCONS_00043135
length 1610
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_021741
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28092083 ~ 28136739 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGTCAACACACTGAAAGCAGCTTAAGCTGGTTGCCAACCGCCGTTAATATCACACTAAGAAGAGAGCAGCTTGTTTCAAGTGACTGACCCAGGTGGGTTCCCTGAATGGTCATCATGAAAGCAGGCAGTTCAAGGTGCGCCTTCTCCCTGGGTTTCCTGGTGGGCAGCTGTAGTTTGTACGTCTTCCTGAGGCAGGTTTGGTTTGAGGAGAGCTTCAGCTGGCAGAGCAATGGCAGGAGCAGCCCGTCTCCACCAATAAGCCAAGAGCAAAACTCCTCCAACCTTACCTGGAGAGTTGAAGGATCTGCCCTGATCAACCTCAAGCATCCTAACCAGCCAGGAGAGGACGGTCACATAGCCGATGAGCTGTTCAGGAAAGTGCGAATCCTATGCTGGGTGATGACCGGACCCAGTAACCTCCAGTCAAAAGCTCAGCATGTGAAGAACACATGGAGTCGCCACTGTAACGTAGTACTATTTATGAGCTCAGAAGAAGACCGCAGTTTTCCCACAGTTGGCCTTGGCACTGGTGAAGGCCGAGACCAACTGTACTGGAAGACCATCCGTGCCTTCCACTACGCCCTAAAGAACCACGGCCATGAGGCAGACTGGTTCCTCAAAGCAGACGATGATACTTTCGTCGTTGTGGACAATTTGCGATGGATCCTGTCGAACCACACACCGGAGCAGCCTATATATTTTGGCAAGCGGTTTAAGCCGTACACCAAGCAGGGCTACATGAGCGGTGGCGCAGGGTATGTGCTCAGTAAAGAAGCTCTAAGAAGGTTTGTGGAGGGGTTTAGCACTAAAGTGTGCACTCATACTACACCGGTGGAGGATCTGGCGATGGGGCAGTGTCTGGAGAAAATGGGGGTCCTGGCTGGAGACTCGAGGGACTCGCTGCACAGAGAAACCTTTCATCCTTTTATTCCCGAGCATCATCTTACTGGAAAGTTCTCCAAGACCTTCTGGTACTGGAATTATTGCTATTACCCAATTGTAGAAGGCCCTCAGTGCTGCTCTGATCTGGCAGTGTCTTTCCACTACGTAGATCCTGTGCTCATGTACACCCTTGAATACTACACTTACCATCTGAGGCCGTTTGGCTACCAGCACCGCTACCAGCCTCCAGTGCCTGCTGTCCTGTCCTCACCGTCCCAAACTGTGAAAAGCACGACAGAAACTCAGAGATCAGAGGAGGGCACTAAAGAAAAACTAGCTTTAACAAACTCAGTGAATCCCAGAGCTGAAGAAGTAAAGACGACTGAAACAAGTAACAAAATCACAAATGCTGCCCAGGAGAGAAACACAACCCACAGAAGTGCAGGGTGATTGTGTTTCTTTTTTGAATGGAGTGTTCTGTAAATCTGAAATGAAGGGACTGACTAATGTGAATGGTAAAGTTGTGTAGCATTTTCTGTGTACTATAAGCATGTGTTGTATTGGGTACAGATTTCAGCTGATTACCAAAAGGTAAAGTGTCCTCCATTAACATTGGAAACCTTGGTTAACATGAAAAATTGCCTTTATTGATTAACCATTTGATCTTTTCATTTAACCTTGTGATCTTTTTCAtcttttcaacattaaaaacaCGTTAAAAATCA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016267 O-glycan processing, core 1 biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-303 Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to act upstream of or within O-glycan processing. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000053958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044834 lncRNA upstream 219378 27870739 ~ 27872705 (+) True XLOC_021738
TCONS_00043124 lncRNA upstream 372920 27703754 ~ 27719163 (+) True XLOC_021734
TCONS_00044833 lncRNA upstream 575810 27508870 ~ 27516273 (+) True XLOC_021731
TCONS_00044832 lncRNA upstream 579981 27508867 ~ 27512102 (+) False XLOC_021731
TCONS_00044831 lncRNA upstream 1492672 26591692 ~ 26599411 (+) True XLOC_021722
TCONS_00044835 lncRNA downstream 3020 28139759 ~ 28160364 (+) False XLOC_021742
TCONS_00044836 lncRNA downstream 3020 28139759 ~ 28277430 (+) False XLOC_021742
TCONS_00044675 lncRNA downstream 3056 28139795 ~ 28160364 (+) False XLOC_021742
TCONS_00043139 lncRNA downstream 3087 28139826 ~ 28249645 (+) False XLOC_021742
TCONS_00043143 lncRNA downstream 186350 28323089 ~ 28325053 (+) True XLOC_021743
TCONS_00043134 mRNA upstream 974 28077953 ~ 28091109 (+) True XLOC_021740
TCONS_00043133 mRNA upstream 1198 28077953 ~ 28090885 (+) False XLOC_021740
TCONS_00043132 mRNA upstream 84776 27912079 ~ 28007307 (+) True XLOC_021739
TCONS_00043131 mRNA upstream 298206 27789795 ~ 27793877 (+) True XLOC_021737
TCONS_00043128 mRNA upstream 298892 27778670 ~ 27793191 (+) False XLOC_021737
TCONS_00043141 mRNA downstream 186247 28322986 ~ 28325846 (+) False XLOC_021743
TCONS_00043144 mRNA downstream 237719 28374458 ~ 28381403 (+) False XLOC_021744
TCONS_00043145 mRNA downstream 237814 28374553 ~ 28383247 (+) False XLOC_021744
TCONS_00043146 mRNA downstream 240621 28377360 ~ 28388513 (+) False XLOC_021744
TCONS_00043147 mRNA downstream 240654 28377393 ~ 28388224 (+) False XLOC_021744
TCONS_00043115 other upstream 1088102 26979174 ~ 27003981 (+) False XLOC_021726
TCONS_00043112 other upstream 1163225 26928743 ~ 26928858 (+) True XLOC_021724
TCONS_00043098 other upstream 2096942 25995027 ~ 25995141 (+) True XLOC_021714
TCONS_00043095 other upstream 2195074 25879768 ~ 25897009 (+) False XLOC_021712
TCONS_00043091 other upstream 2229786 25861398 ~ 25862297 (+) True XLOC_021710
TCONS_00043140 other downstream 3578 28140317 ~ 28148953 (+) True XLOC_021742
TCONS_00043142 other downstream 186341 28323080 ~ 28325841 (+) False XLOC_021743
TCONS_00043158 other downstream 399622 28536361 ~ 28536457 (+) True XLOC_021747
TCONS_00043159 other downstream 399926 28536665 ~ 28536778 (+) True XLOC_021748
TCONS_00043161 other downstream 478088 28614827 ~ 28614942 (+) True XLOC_021750

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10856786_10861403.mRNA True 2779 mRNA 0.41 3 CI01000001 10855960 ~ 10862138 (+)