Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043136 |
| length | 1664 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_021741 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 28092083 ~ 28136739 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001525 | angiogenesis | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0016266 | O-glycan processing | biological_process |
| GO:0016267 | O-glycan processing, core 1 | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016263 | glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-061013-303 | Predicted to enable glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity. Predicted to be involved in O-glycan processing, core 1; angiogenesis; and kidney development. Predicted to act upstream of or within O-glycan processing. Predicted to be integral component of membrane. Orthologous to human C1GALT1 (core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1). |
| ensembl_id | ENSDART00000158260 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044834 | lncRNA | upstream | 252944 | 27870739 ~ 27872705 (+) | True | XLOC_021738 |
| TCONS_00043124 | lncRNA | upstream | 406486 | 27703754 ~ 27719163 (+) | True | XLOC_021734 |
| TCONS_00044833 | lncRNA | upstream | 609376 | 27508870 ~ 27516273 (+) | True | XLOC_021731 |
| TCONS_00044832 | lncRNA | upstream | 613547 | 27508867 ~ 27512102 (+) | False | XLOC_021731 |
| TCONS_00044831 | lncRNA | upstream | 1526238 | 26591692 ~ 26599411 (+) | True | XLOC_021722 |
| TCONS_00044835 | lncRNA | downstream | 3295 | 28139759 ~ 28160364 (+) | False | XLOC_021742 |
| TCONS_00044836 | lncRNA | downstream | 3295 | 28139759 ~ 28277430 (+) | False | XLOC_021742 |
| TCONS_00044675 | lncRNA | downstream | 3331 | 28139795 ~ 28160364 (+) | False | XLOC_021742 |
| TCONS_00043139 | lncRNA | downstream | 3362 | 28139826 ~ 28249645 (+) | False | XLOC_021742 |
| TCONS_00043143 | lncRNA | downstream | 186625 | 28323089 ~ 28325053 (+) | True | XLOC_021743 |
| TCONS_00043134 | mRNA | upstream | 34540 | 28077953 ~ 28091109 (+) | True | XLOC_021740 |
| TCONS_00043133 | mRNA | upstream | 34764 | 28077953 ~ 28090885 (+) | False | XLOC_021740 |
| TCONS_00043132 | mRNA | upstream | 118342 | 27912079 ~ 28007307 (+) | True | XLOC_021739 |
| TCONS_00043131 | mRNA | upstream | 331772 | 27789795 ~ 27793877 (+) | True | XLOC_021737 |
| TCONS_00043130 | mRNA | upstream | 341586 | 27782071 ~ 27784063 (+) | False | XLOC_021737 |
| TCONS_00043141 | mRNA | downstream | 186522 | 28322986 ~ 28325846 (+) | False | XLOC_021743 |
| TCONS_00043144 | mRNA | downstream | 237994 | 28374458 ~ 28381403 (+) | False | XLOC_021744 |
| TCONS_00043145 | mRNA | downstream | 238089 | 28374553 ~ 28383247 (+) | False | XLOC_021744 |
| TCONS_00043146 | mRNA | downstream | 240896 | 28377360 ~ 28388513 (+) | False | XLOC_021744 |
| TCONS_00043147 | mRNA | downstream | 240929 | 28377393 ~ 28388224 (+) | False | XLOC_021744 |
| TCONS_00043115 | other | upstream | 1121668 | 26979174 ~ 27003981 (+) | False | XLOC_021726 |
| TCONS_00043112 | other | upstream | 1196791 | 26928743 ~ 26928858 (+) | True | XLOC_021724 |
| TCONS_00043098 | other | upstream | 2130508 | 25995027 ~ 25995141 (+) | True | XLOC_021714 |
| TCONS_00043095 | other | upstream | 2228640 | 25879768 ~ 25897009 (+) | False | XLOC_021712 |
| TCONS_00043091 | other | upstream | 2263352 | 25861398 ~ 25862297 (+) | True | XLOC_021710 |
| TCONS_00043140 | other | downstream | 3853 | 28140317 ~ 28148953 (+) | True | XLOC_021742 |
| TCONS_00043142 | other | downstream | 186616 | 28323080 ~ 28325841 (+) | False | XLOC_021743 |
| TCONS_00043158 | other | downstream | 399897 | 28536361 ~ 28536457 (+) | True | XLOC_021747 |
| TCONS_00043159 | other | downstream | 400201 | 28536665 ~ 28536778 (+) | True | XLOC_021748 |
| TCONS_00043161 | other | downstream | 478363 | 28614827 ~ 28614942 (+) | True | XLOC_021750 |
