RNA id: TCONS_00044839


Basic Information

Item Value
RNA id TCONS_00044839
length 2116
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id XLOC_021745
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28390669 ~ 28420584 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCATTGTGTGCCAAGACGAGCCCATCAACAGCTCACTgaccttttctctctctctctcttctcggCACCAGTCAGAACTATTCCCCTCTCATTAGACCACACACACACCGAGGCAGAGAGAGAGCCAAGTATCATCCAGCACTGCTGAATAGCTCCTCCACTAATTACTGAATTCATTCAGCGCGGATGTGTGTGGATGTGCAGTGCAGCTCTGATTCTGCGCGCGCTCGTGCGAATGTGTCGGAGTTCATCAGAGCAGCATCAGTCGGCGTAGATGAGGAAGCCGGAGAACGTGCTGTACTTGTTGGTGTTTCCTCCGTGGACTTTGCCTCCGTCCAGCTGCACACAGACCTCGTCTCCCACGTCTAAATGCAGGATCACACTGTTGGAGGCGTAGTCGTAATTCTGGTCAGCGTCCTGGGCGATAGCGCTGGCCCTcacctgtcacacacacacacaggacaaaTGAAGACACGGTAAGAGGAAGGACAAACAGAAGATTGCCACCATATTCCAGTAATCTAAAATACATAACCAACGGATGCAAACTAACAGAGCATTCGACAGTGACAATCCCACCACACTCCTGGGACACTTTAGCCTCATATGTCTGAGGTCCGACAACAAGCCGACCATCACAACTTTATCAGCCGCTACCAAGAGACCAGCTTTCACTAGCTGTCAAAAGCAGCACGCAGACAATGATCAGCCAGATGGTCACAGACCCTACAGAAGAGTGAAGCGGGGCCACCTGATGTGTTCGAAATGGACGTAATTGAGTGGACCGAAAAGATAATTAATGAGCAATCAACGGACATGCAATAGAAGGGGGGGACACGTACAGCATGCAGGGGATTCAATCTAAGAGTTATGAATGATTTAGCAGAGGAAGCAGACTTGCATGACAACACAGATCTGTACAGGTCAGACCAATTTAATCTACTATCGCTCTAATCACATTTACAGGTGGTCTACTGTATTAAAGCAGAGTTTTTTAACAGAATAACGATAGGCTTTCATTGCACAGTcagatacaaataaatattttatggtGTGCTTGGGTGAaactgtttgtaaaaaaaaaaaaaaaaacgatttccCCGTCAAATAAAAAGGTGCAAGAGTGCGTCTTGATCCACAAAGGTCATGCAGTCACTTAAAACCACAACAGAAAAGTCCTTTTTTCCTGCTCATTTCCAGCCTTCAGAATTTAATTCACATCAAGAGAATGAATGACTGAGCATGGAAGCTGTCatattttttgtgcatttattatttatctgATGTACAAACTGGCACCAGACCACACCATGGCAGCATGACTGCTGAGTCGTGTGACACATTTTAGGTGATGAGTGAGATGTAAATGTGCTGTTTGTTTCAGTTATTATATTGTCAAAACATATGGAGAGAATTTGGACACACAGATATTGATGTCGCCATTTCTAATCCACCGTGCAAAATAACTGTGTCCAATTCGAATTGATGTTATTTAGTATGTTGGTATTCAGTTGTATGATTTAAAAGTACAAAGCTTTTAATACAAGTATTCTGACTCATGTAGATGAATCCCAATGGGGTGAAGACAAACTAATTTGAGAAAGTACTTAATTTAACTGCACACATAATGTTCAAATGAATGGGACAAAATGTTGTTAAAGGGGCAATTCAACCAAAAAAtgtattctgttatcatttacttttatGTTTTTTACCTGTGTgtaacagaaatttgggaaattATATCAGGTTTTTGGATTTACAGGGGAAAAAAATCTTGTGGAAGAAAGTCGTACATGTTTGGAATTTCATGAAGGTGATTAAATGcctacaacaatttttttttttttactttgggcAATTGAGTCGAATATTTCAACTTTTACAATCCGTGAAAATTTTCCACAAAAGGTTTGTTATTGAGAAAAAAAGTGTTCTTTagacacaaataaaaatgtatttttcgaacctaaaatgttttttctttggcTTCACTTTGAAAAACCCTTTTTTGGACTTTTTTTAAGAGTGTGAACAGAAAACCCCACTCAATGTTTAGACTGCACAACACcccttactgtaaaacacattttattggaGTGCCCTCCTTTTCATG

Function

GO:

id name namespace
GO:0033596 TSC1-TSC2 complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043150 lncRNA upstream 7702 28377443 ~ 28382983 (+) False XLOC_021744
TCONS_00043143 lncRNA upstream 65632 28323089 ~ 28325053 (+) True XLOC_021743
TCONS_00044836 lncRNA upstream 113255 28139759 ~ 28277430 (+) False XLOC_021742
TCONS_00043168 lncRNA downstream 349738 28770322 ~ 28773116 (+) True XLOC_021754
TCONS_00044676 lncRNA downstream 475191 28895775 ~ 28896080 (+) True XLOC_021758
TCONS_00043175 lncRNA downstream 523730 28944314 ~ 28960309 (+) False XLOC_021761
TCONS_00044843 lncRNA downstream 523864 28944448 ~ 28960309 (+) False XLOC_021761
TCONS_00044844 lncRNA downstream 532921 28953505 ~ 28960309 (+) True XLOC_021761
TCONS_00043146 mRNA upstream 2172 28377360 ~ 28388513 (+) False XLOC_021744
TCONS_00043151 mRNA upstream 2179 28378006 ~ 28388506 (+) False XLOC_021744
TCONS_00043152 mRNA upstream 2366 28378543 ~ 28388319 (+) False XLOC_021744
TCONS_00043149 mRNA upstream 2374 28377428 ~ 28388311 (+) False XLOC_021744
TCONS_00043147 mRNA upstream 2461 28377393 ~ 28388224 (+) False XLOC_021744
TCONS_00043156 mRNA downstream 73605 28494189 ~ 28568978 (+) False XLOC_021746
TCONS_00043157 mRNA downstream 73617 28494201 ~ 28532380 (+) True XLOC_021746
TCONS_00043160 mRNA downstream 162281 28582865 ~ 28681775 (+) False XLOC_021749
TCONS_00043162 mRNA downstream 228280 28648864 ~ 28681775 (+) True XLOC_021749
TCONS_00043163 mRNA downstream 272694 28693278 ~ 28713982 (+) True XLOC_021751
TCONS_00043142 other upstream 64844 28323080 ~ 28325841 (+) False XLOC_021743
TCONS_00043140 other upstream 241732 28140317 ~ 28148953 (+) True XLOC_021742
TCONS_00043115 other upstream 1386704 26979174 ~ 27003981 (+) False XLOC_021726
TCONS_00043112 other upstream 1461827 26928743 ~ 26928858 (+) True XLOC_021724
TCONS_00043098 other upstream 2395544 25995027 ~ 25995141 (+) True XLOC_021714
TCONS_00043158 other downstream 115777 28536361 ~ 28536457 (+) True XLOC_021747
TCONS_00043159 other downstream 116081 28536665 ~ 28536778 (+) True XLOC_021748
TCONS_00043161 other downstream 194243 28614827 ~ 28614942 (+) True XLOC_021750
TCONS_00043169 other downstream 376842 28797426 ~ 28797548 (+) True XLOC_021755
TCONS_00043170 other downstream 379519 28800103 ~ 28800219 (+) True XLOC_021756

Expression Profile

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