RNA id: TCONS_00043152


Basic Information

Item Value
RNA id TCONS_00043152
length 850
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_021744
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28374458 ~ 28388513 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAAATTCTGCTAACAAAAGAGTGTGACTGCTAACAGCTTTAACGTGTCAAACCGCTTCATCTAAACTTGAAGATATCGGTCATCATCTGTGTTACCATCAATGGTAATTCAAAGAAGCCTTCCTCCTGTTTGACCGGACGGGAGATGGGAAGATCACATACAATCAGTGTGGGGATGTGATGCGTGCGCTGGGCCAAAACCCTGTAAATGCTGAGGTGCTCAAGGTCTTGGGCAACCCAAAAGCAGAAGAAATGAACCATAAACTGCTGGACTTCGAGCAGTTTCTGCCCATGCTCCAGGCCATCGCCAAGAACAAAGACCAGGGCACGTTTGAGGACTTTGTGGAGGGGCTTAGAGTATTTGACAAGGAAGGCAACGGCACAGTCATGGGTGCTGAGCTCCGCCACGTTCTCACCACACTGGGGGAAAAGATGACCGAAGAGGAGGTAGAAACACTTCTAGCAGGACATGAAGATGCTAACGGTTGCATCAATTACGAAGAGCTCGTCCGCATGGTCATGAGCGGTTGAAGATAAAGACCACATCcatttgtttgtcttattttctatGTAATAatttctgtgtatttttttttcttcttcctatTCATTCCCTCACCTTCATTTGCTTAGTGGCTCCAGTCgtttttcttgtgtgtgtgcaCTCATTTGGGTATTATTATTAGAAGTGCCTTTATCTTCTTTAAGTTCCCATATGACTCCCCAAGAGATAGAGCTCCTGTCCTGTGGTATTCAAACCATATAGCGATATGAAAAAGATCTCTTGTGTGCTGAAGCGCTCTGCAATAAAAGCTCTTGATGCAGCACATATCGGCAGCGTGTACGCA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9170 Predicted to enable calcium ion binding activity. Orthologous to human MYL6 (myosin light chain 6) and MYL6B (myosin light chain 6B).

Ensembl:

ensembl_id ENSDART00000145327

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043143 lncRNA upstream 53490 28323089 ~ 28325053 (+) True XLOC_021743
TCONS_00044836 lncRNA upstream 101113 28139759 ~ 28277430 (+) False XLOC_021742
TCONS_00043139 lncRNA upstream 128898 28139826 ~ 28249645 (+) False XLOC_021742
TCONS_00044835 lncRNA upstream 218179 28139759 ~ 28160364 (+) False XLOC_021742
TCONS_00044838 lncRNA downstream 2350 28390669 ~ 28420584 (+) False XLOC_021745
TCONS_00044837 lncRNA downstream 2350 28390669 ~ 28420584 (+) False XLOC_021745
TCONS_00044839 lncRNA downstream 2366 28390685 ~ 28420584 (+) False XLOC_021745
TCONS_00044840 lncRNA downstream 2394 28390713 ~ 28420584 (+) False XLOC_021745
TCONS_00044841 lncRNA downstream 2446 28390765 ~ 28420584 (+) False XLOC_021745
TCONS_00043141 mRNA upstream 52697 28322986 ~ 28325846 (+) False XLOC_021743
TCONS_00043135 mRNA upstream 241804 28092083 ~ 28136739 (+) False XLOC_021741
TCONS_00043156 mRNA downstream 105870 28494189 ~ 28568978 (+) False XLOC_021746
TCONS_00043157 mRNA downstream 105882 28494201 ~ 28532380 (+) True XLOC_021746
TCONS_00043160 mRNA downstream 194546 28582865 ~ 28681775 (+) False XLOC_021749
TCONS_00043162 mRNA downstream 260545 28648864 ~ 28681775 (+) True XLOC_021749
TCONS_00043163 mRNA downstream 304959 28693278 ~ 28713982 (+) True XLOC_021751
TCONS_00043142 other upstream 52702 28323080 ~ 28325841 (+) False XLOC_021743
TCONS_00043140 other upstream 229590 28140317 ~ 28148953 (+) True XLOC_021742
TCONS_00043115 other upstream 1374562 26979174 ~ 27003981 (+) False XLOC_021726
TCONS_00043112 other upstream 1449685 26928743 ~ 26928858 (+) True XLOC_021724
TCONS_00043098 other upstream 2383402 25995027 ~ 25995141 (+) True XLOC_021714
TCONS_00043158 other downstream 148042 28536361 ~ 28536457 (+) True XLOC_021747
TCONS_00043159 other downstream 148346 28536665 ~ 28536778 (+) True XLOC_021748
TCONS_00043161 other downstream 226508 28614827 ~ 28614942 (+) True XLOC_021750
TCONS_00043169 other downstream 409107 28797426 ~ 28797548 (+) True XLOC_021755
TCONS_00043170 other downstream 411784 28800103 ~ 28800219 (+) True XLOC_021756

Expression Profile

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