RNA id: TCONS_00043665


Basic Information

Item Value
RNA id TCONS_00043665
length 2416
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_022103
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3751451 ~ 3759692 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTCAGTCTATTTCCCGTGTGGAAGACCCCATGAAATGCCCCTGAAACTCCCGACGGCGATTGTTGTCTTTCATTCATTCGCAGCTCGCGGACCTCGCTGGTGTGCACACTTTGGACTTTGTCCCGACCGCTCCTTTAAAAGGTGTTCCAGTAAGACACAATGAGTGATTCTGGCAAGGACACAGTGGCGACTAAAGAGAAAGATGGAGCAGAGAAGAGAGGACGTGGAAGACCCCGAAAACACCCACAGGAGGCCAGTGGATCTCCTACACCGAAGAGACCCAGAGGAAGACCAAAGGGCAGCAAAAACAAGCCGAGCTCTACTGTGTCTCGGGGCAAAAAAGCAGCAGCGGCTTCGGCACCTGCAGGGACTAAACGCCGAGGACGACCCAAGAAAGCAGAGAAGGAGGAGCAGCCATCCAAGTCCTccgaggaggaagaagaggaggaagaggaacaGTAACTAGCGACTCGTGCTACCTCACAATCCAACGTTATTTCTTCCTGTTGACCAGAGCTGGACTGACCCTTTCCCCCACCCTGATTTCTCCCCTCTACCCTCTCTCTTTTCCCGTACACTAGTGCCACCCTCACCCTCCAATTCACCTTTATGCTCTAGTGCCCCCTAGTGTCAGGGAGGCTGGCATGTCCATGCGGCTTCTGTGTAACACCactggaaaaaacaaaaaaaggactCAAAATATACTGTATGTCCATTCATGGATGCATGCACacatgtatgcgtgtatgtaaATGTCTCGCACTCAAAGGGTAATTGGTCTATCATCATACTGGACAAAGATATGCTCTGACGGCGGCTTGACACAAAGCGATTTGCAAAATACTgaagtttcttttgtttttctcgTCTCACAAACAGTTTCAGGCCTTGGGGATTCACGTTTATTTTTGCAAGTCTAAATCTAAAATTGCGGTAGGTTGTGTGAAATTCATGTCGTCGTGTACTGGACAAAGGTGAATTGACctacttgtttgtttttacttgggttgtgtgtgcgcgtgcgtgtgtgtgtgtgtggtaactCGATGTCTCCAGTtatacctttattttattttttagcttctgtGATTTTCAAGCTAGAACTAAACCTTGAGTGAGCATAATCTAGAGGACTTTTAACTTGTAATCAACATATCATCAAATGCTTTTTGTCGTGGATATCTTCCTCCTTCATAACAGCCGATTCTCCACCATCatgatttatatacatataaataaatcccCGTTAAATTTGTTAGCACGCCTCGTTGTGCGTTACGCAGAGGAACGTCTTGACTACGTTTCACGTTTTATTTGGTCGTGGAGGACGATGATTGCTTTTAATCGTGACCCGTTTTCCCCATCACCATCCTATACGACATCGTCCTCGAAACAACAACAAACAGTAAACTGCAGATTTGGACGACAGCAGTGCTTTAAATTTTATCGGCCCCAAACCCGTTGACCTCGCATGTGACTGTAAATGTGTTATATTTTAATAGTAGTACAGATCGATTAGAGCATTCCATTTAGCTGATGAAACGTCCCGGCCGTGTCAGTACTTCAGTCCACTCGGACATCTTtggcttcattttgtttttgttgtttttgacgTGTTGAATTCCATGTCAGGGAACGCTGATCGGTCCAGTGACTGGGTCTCCTCTCAGAACTTAATGCTGCTACAAACATGGTTAACTAAAAACCCGGAATACTGCAACCCGGTCAGTTCTACTCTGGACTTGACCGTCACTTTCATACCTCACTTTACAACAGCCTATGACGGATTTCTCTCCTCTGTTAATTTTCCTGACGCCGTTCAACTGGTCTCAGTGCAGCGTTTGCCGAGAGCGCTCGTTTGATCCTCCTCTAGTGTGGGGTTATTGTTGCTCTGTTTTTGTTTCAAACTGGTTTTGCTTTACAGCGGTGTGCATCATTTAATTCCTGTAGAATCATCTGGAGACGCCAACAGCGGGATGCATTGAGTCAGAGAGATGCAAAACGTGTTCACAGACTGTGGTAGAGATCTAGGTTTTATTTTCTTCTGTACGTATTTGTTTGGTGCACTGAATTGACTTATTTTTGCTTTCTTATCCTGAATAAAATGACTTTAGTGTGGCACCTGAAGCCTAGGGTTTGTTTATTTCTCCTGTCTCCGATTTAAACTTCCTCATCCTGCTAGCCGCTTTAGCTCCGAGCCCTTGTTTTGGTAGATCATGATGGTACTATATACGGCTGTTTGACGCAGTGGTTTTTAACATGCCCTTCATTACTGATGTCTTGTTTTTATGTGCCCGTGCACACAACTGGTTTGGGATCAGTCTTTTCAATGTATACACTCTGCATTTTCTATTGTGGACTGCAGGAATTTATATTCAAAAATGGTAATAAAGTTAAGAATTCGtacatgtgt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0006284 base-excision repair biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010502-1 Predicted to enable transcription coregulator activity. Acts upstream of or within regulation of RNA splicing. Predicted to be located in chromatin. Predicted to be active in nucleus. Is expressed in DEL; central nervous system; heart; margin; and otic vesicle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human HMGA1 (high mobility group AT-hook 1).

Ensembl:

ensembl_id ENSDART00000189382

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044944 lncRNA downstream 20845 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 70497 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 300072 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00044942 lncRNA downstream 759344 2960218 ~ 2992107 (-) True XLOC_022095
TCONS_00044941 lncRNA downstream 907197 2842399 ~ 2844254 (-) True XLOC_022093
TCONS_00043691 lncRNA upstream 1157458 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043692 lncRNA upstream 1158405 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043693 lncRNA upstream 1158887 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043704 lncRNA upstream 1360221 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 1431266 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043664 mRNA downstream 30007 3710946 ~ 3721444 (-) True XLOC_022101
TCONS_00043662 mRNA downstream 47882 3664387 ~ 3703569 (-) False XLOC_022100
TCONS_00043660 mRNA downstream 70420 3662068 ~ 3681031 (-) False XLOC_022100
TCONS_00043658 mRNA downstream 70425 3653386 ~ 3681026 (-) False XLOC_022100
TCONS_00043673 mRNA upstream 18144 3777655 ~ 3802071 (-) True XLOC_022104
TCONS_00043674 mRNA upstream 190037 3949548 ~ 4019928 (-) True XLOC_022105
TCONS_00043675 mRNA upstream 326982 4086493 ~ 4091009 (-) True XLOC_022106
TCONS_00043676 mRNA upstream 456685 4216196 ~ 4225606 (-) False XLOC_022107
TCONS_00043677 mRNA upstream 456880 4216391 ~ 4225830 (-) False XLOC_022107
TCONS_00043654 other downstream 695355 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2532950 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 3130365 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 3262254 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1157394 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1157444 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1451510 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1540768 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1671685 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

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