RNA id: TCONS_00043674


Basic Information

Item Value
RNA id TCONS_00043674
length 4868
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_022105
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3949548 ~ 4019928 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCAAGCATTGCTGTCGTGTGACGTCGGTAGCTCTGATTTAACTACTTAATTTTAACCTGTTACTACATATGCGGTCAAAATTCATATCGTGGACATTGGGATAATATAATATTATCCTAAAAGCATCAACTCACCGAAACTTCACTTTGTTTTCGTTAGTGATGCTAAATAGAGCCAGAAGAAAAATGAAACTACATCTCCCATGAGTTCCGGGTAAAGAGTGATGACGATGAATTTGCTCTGCGAAACATGGATTGTGGCGACATGAGTTTAATATTGCGATTTTATCTTTGTAGTATTGATTATTTATGAGCATGATGGGTGTCAATAATCGCGCGGTTGTcgtctgtgtgtgtttaatcaTATTGACAGCCAATTCAGCGCCGTTTGCTCGGGCAGATGATCAGATATACAGTAAAGCCGAGGGTGAAgctgtcaataataataataacaacgccGACAGTGATGCACAAGCTCAAAATCCTGCTGATGGACACGCTGAACAGCTGACCAGGTTAAATGAGACTGACACCTCCAGCAATGACACTGCTCAAACCACCACACCTGCGCCCAAGCCTGCGACGCCCGAGCCTCCTAAAAATGAGCCCATCCTGCCTGTCCAGACAGGGGTCAAGGCCCAGGAAGAGGAGCAGTCCAGCGGGATGACCATTTTCTTTAGCCTGCTGGTCATCGGTATTTGTATTATACTGGTCCACCTGCTGATCAAGTTCAAGCTGCACTTTTTGCCTGAGAGTGTGGCGGTGGTGTCACTGGGGATTCTGATGGGAGCGTTTATCAAGATCATTGAATCTCAACAGCTGGCCAACTGGAAGGAGGAGGAGATGTTTCGTCCTAATATGTTCTTCCTGTTACTTCTTCCACCAATCATTTTTGAGTCTGGATACTCATTGCATAAGGGTAATTTTTTCCAAAACATAGGCTCCATCACGTTATTCGCCGTGTTTGGAACAGCGATTTCAGCTTTCATCGTGGGAGGGGGAATCTACTTCCTAGGCCAGGCCGATGTTATCTACAAGATGACGATGACAGACAGTTTTGCGTTCGGCTCTCTGATCTCCGCTGTAGATCCCGTGGCCACCATCGCCATCTTTAACGCTCTGAATGTGGATCCTGTACTCAACATGCTGGTGTTTGGGGAGAGCATCCTAAACGACGCTGTCTCCATCGTATTAACAAATACAGCGGAGGGCTTCGGGGGCTCGGACGTCTCTACAGGATGGGAAACTTTCATGCAGGCGCTGGGATACTTCCTGAAGATGTTCTTCGGGTCGGCTGCATTAGGCACCCTCACCGGCCTCATCTCTGCCATTTCCCTAAAACACTTCGACCTGAGGAAGACCCCGTCTCTGGAGTTTGGGATGATGATTATTTTTGCATACCTGCCCTATGGTCTTGCTGAGGGCATCAAACTCTCCGGTATCATGGCCATCCTGTTCTCGGGTATTGTGATGTCCCATTACACTCATCATAACTTGTCTCCGGTCACCCAGATCCTCATGCAGCAGACTCTGCGCACCGTAGCCTTCATGTGTGAAACCTGCGTGTTTGCCTTCCTGGGGCTGTCTATCttcagtttccctcacaagtTCGAGCTGTCCTTTGTCATCTGGTGTATAGTTCTGGTTCTTGTTGGTCGAGCTGTGAATATCTTTCCGCTCTCCTTTCTGCTCAACTTCTTCAGAGACCATAAAATCACCCCCAAGATGATGTTCATCATGTGGTTCAGTGGTCTGCGTGGTGCGATCCCTTACGCCCTCAGTCTCCATCTGGGTCTGGAGCCCATCGAGAAGCGGCAGCTGATCGGCACCACCACCATCGTCATTGTCCTCTTCACCATCCTGCTGATGGGGGGCGGCACCATGCCACTCATCCGCATAATGGACATTGAGGAGAGCCAATCACGGCGCAAGAGCAAAAAAGACATCAACTTGAGCAAAACTGAGAAAATGGGTAACGCCATTGAATCTGAGCATTTGTCTGAGCTGACCGAGGAAGAGTATGAAGCTCAGATTTACCAGAGGCAGGATCTGAAGGGCTTCCTGTGGCTTGATGCCAAGTACCTGAACCCCTTCTTCACCCGCAGACTCACACAAGAGGACCTGCTGCATGGACGGATCCAGATGAAGACGCTCACTAATAAATGGTATGAGGAGGTCCGTCAGGGTCCGTCCGGCTCTGAGGATGAAGAGGATGAGGCAGAACTGCTCTGAGACTGGACTCAATCTGCCATTCTCGTAACACATGGCACCAAGAATACACACTGTGCCAGGCTGTGATGGGCGCTACGCTTCCACACACAACTCCACGGATTGCTTCACGGCCTAATGAGGAAATGAGCAGCCATGGTGGGAATCCTAGGATTTTTGAGGCATAATAGAACCAGCAATACTGGACACATTGTTGGAGAGTAAGTTGAAGCACTGTACGGTTATGTGATCGTAGTTTCTGGTTCTTTTTTCTGGGGGTTTTGTTGCACATACAGGGAAATGACACCAATGAATGTTTGAGTGTGGGATTAATTTAACTACATAACCTATTCTTTCTGTTTATGAGGTATTTATTTGTTGTGCCATCTTTATAAATGGGAGTAAAGGAATCTTTTATAATGTACTTGACACTGTTTTTGTAGCAGTTTATATATGAAGCTGAGACTGGAGGAATGTTTCTGTGCCTCATAAACTGAGCACAAAGCCGAGGACTGAAAGTGatgtaaaaatgtgaataaaatgcTCATTCTAATAACTTGTGTGTACTTCGGTAAAATGTAGgtaattattatataaacatcAAACAGTTCTGATAGAATATCTTACCACAGGGGGGCAGTAAACAGGGttctggaaaatgcttgatttttaaagggccatgaaaccccctcgtttcagcagggtgttttcacacctctactttggaaaagtcagaaaagtgggcgtgtccagctctgtttaggggggagtgtcggaggaactaaagtgggatggtgtgggagtttctatttgggcacgcgcgagtttcagtcaaaatactcacacacagaagaaagtgatggtgtttaacctacatggacatctgtagtcgaattatttgccaaattattaaatgttagactttaactgcagtttggctctttcattcagggaattcattcatgtccctcccaacaaatgagatatttgattcgaggatctgctctaatcgtgtatttttcatgcaatgtttgataccgcacagcgaatgagagaaaaaaaaaacctcagcatttcccggaaacttagatgcacacgacaggtagcgtcagaaagccgcgtgtgttattccggtcactaaatgcggtaaaaacccaacacgaggttaaagtttggttgtggtgctaacatgtttccactcggtgcaatagttaatttggttcgatacaaacaaactgaataaacaaagagcactggccgctcacttaccaaatctgtagagacaggacaatcaccagcaactagagccgcgtctttatgaagagaagactacaagcggatctcagcgtttgcagatgagaacagctctcaggtaaacaataatcctccttagacacgtaagttattgttgtcgagcgtcgcgtacactgttaatccacacgtgatccggatgagctctcacagagagaaaatgaaaacaaaacttaacggcagcaaactataaaagcaacacttcacacttgttttgccaacacaacgtggcgtctatgtcgCGTAAAAACAcgctgacagtaatgaatattaatgaagttgcacaatagagcgcgctgattggtttgaaccaagctttactcatgcattaatgcatcacactgtaagacgtaataagacacactctggcacagacgcccagtctacacgctggaatacacgctattatgtcatgaccgtgacgcagcttcaaaaattcgtttcaaacaggaagtacgaatttgcttgaaataacgcaaaaacaaccaatttacactttttagtaaaatataggtgtcctaatagtgtttttagctgtgtgggacacatatacaactgtcaacagctcaaaacatgtgttttggtgtttcgtgaccctttaatgtagGGTTTTCAAGGTTAGAAATCTCTTTGGATTTTGGACAAAGTACTTGAACCTGCTTAAGTTTGAAATTGCAGGGCTCAAATTGCTACCTTTTTGATAGCATATGTGCACTAAATTTGATCTATGTgagctcaaaatatatttggaaacATTTGTGCTAGTGCATTGATTGTAGCCTTACGTccagttttcattgcaaaatgtaagtgtaaataatgttatttaaatgatTGACAGCTCTAAGTTATTAAAACTGAACAATTAATGGCATTACATTTTTTGGGGGAATTTGAATTTCCTAACTTGATtattaaaaatctgaaattgAAGACAACTGAATTTTTTTAAGTCAGATGTTTATAGACGTGTTTTCAAACTGATATtgggtttgtaaaaatacagttgcCAATTATCAAGATGAAGAAACTAAGAACAACAAGTTCAATATTCTGAAATTCAAAACCATTCAGATTGAGACATTCAGAGTAGACGATCACCGAAAAGTCAAACTAAGCATTTTGGCCAATCAGAAAAGCTGCGTGTATTAGCTGGTGTTTGTTTGGCTCTGGAGGAGACCATTCTTCAGCAAATCGACTACCAGGTGTCAGCTATTTTCAGTTTTTTGAGTAATAAACATGCATGCTTCAGTGAACCAAAttcatataattaattaaattacatctcATTGGTTAATCAAACTTACTTAAGCTTTCGGTGTTTTGACGGATAAAGAGCTGATTCTGAC

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041212-7 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport and regulation of intracellular pH. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Orthologous to human SLC9A8 (solute carrier family 9 member A8).

Ensembl:

ensembl_id ENSDART00000021062

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043668 lncRNA downstream 190091 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA downstream 190112 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00044944 lncRNA downstream 218942 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 268594 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 498169 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043691 lncRNA upstream 897041 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043692 lncRNA upstream 897988 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043693 lncRNA upstream 898470 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043704 lncRNA upstream 1099804 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 1170849 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043673 mRNA downstream 147477 3777655 ~ 3802071 (-) True XLOC_022104
TCONS_00043666 mRNA downstream 189856 3751458 ~ 3759692 (-) False XLOC_022103
TCONS_00043665 mRNA downstream 190037 3751451 ~ 3759511 (-) False XLOC_022103
TCONS_00043669 mRNA downstream 190203 3752979 ~ 3759345 (-) False XLOC_022103
TCONS_00043667 mRNA downstream 190724 3752836 ~ 3758824 (-) False XLOC_022103
TCONS_00043675 mRNA upstream 66565 4086493 ~ 4091009 (-) True XLOC_022106
TCONS_00043676 mRNA upstream 196268 4216196 ~ 4225606 (-) False XLOC_022107
TCONS_00043677 mRNA upstream 196463 4216391 ~ 4225830 (-) False XLOC_022107
TCONS_00043678 mRNA upstream 201914 4221842 ~ 4225606 (-) True XLOC_022107
TCONS_00043679 mRNA upstream 372219 4392147 ~ 4404105 (-) False XLOC_022108
TCONS_00043654 other downstream 893452 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2731047 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 3328462 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 3460351 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 896977 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 897027 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1191093 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1280351 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1411268 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000150_00831879_00846897.mRNA True 1308 mRNA 0.49 11 CI01000150 831879 ~ 846897 (+)
bowfin (Amia calva) AMCG00008110 True 5278 mRNA 0.43 16 CM030123.1 42552397 ~ 42579983 (+)