RNA id: TCONS_00043673


Basic Information

Item Value
RNA id TCONS_00043673
length 1197
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_022104
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3777655 ~ 3802071 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAACTCGTCTGAAACTGACCTGTTTCAGTCCAAAATATCCAAAGAGAATGATTTGCTCCTGGGAACCATCTACTCCATCTTTGGTGTGCTTTCTTTGATGGGAAACTCCACTCTGCTGTTTGTCGCTTATCGTAAGAAATCGTCTCTAAAACCGGCGGAGCTCTTCATCATCAACCTCTCCATCAGCGATCTGGGCATGACAGTCTTCCTCTTCCCCTTCGCTATTCCCTCTGCCTTCGCTCACAAGTGGCTGTTTACGGAGGTGATGTGCATGTGTTATGCCTTCTGTGGAGTTTTGTTCGGCCTCTGCAGCCTCAGCAATCTGACGGTACTGTCCTGCGTGTGCTGGCTCAAAGTGTGCTGCCCAAACTACGGTAATAAGTTCTCGTCGTGCCACGCTCGTCTGCTGGTGGTGGGTGTGTGGTGTTATGCTGCAGTGTTTGCAGTGGGTCCTCTGTCGGGATGGGGTCAGTACGGGTCCGAGCCCTACGGCACCGCCTGCTGCATCGACTGGCACGCGCCGAGCTCCAGCACACCGGCTATGATCTACATCGTCTGCCTCTTCTTCTTCTGCTATATCGTGCCCTGCTGCGTCATCATCCTCTCGTATTCGCTCATCCTGGTGACGGTACGAGGCGCTCAACACGCAGTGCAGCAGCACGTCTCTCCTCAAAACAAGATCTCCAATGTGCAGACGCTTCTGGTCAAGCTTTCAGTGGCAGTATGTTTTGGTTTTCTGATGGCGTGGAGCCCGTACGCTGTAGTCTCCATGTGGGCAGCCTTCACCGAACCAGACCTGGTCCCTCCCATAGCATTTGCCCTGGCGGCAATGTTTGCCAAGTCCTCCACCCTCTACAACCCGATGGTCTACCTCGTCTTCAAGCCCAGCTTCCGGAAATCCCTGTGTCGTGATGCCACAAAGTGCAAGAGAAAGCTCTGCCCCTGCGTGTGCCAAACAGACACCCAACACCAAGGCACACCGAGCCTGAACACCAAGGACAAGTGCAAACTCACATGGGTCTCTAATGGATTGAACGAGAGCCACCAGTCCTGCAGACACTGTCCAGAAAGACAGACAGGGAATTACCTGGACATCACGCCTCAGAGGACAGCACGAGTCCTGACAGGAACCACACACAACGAGGTGGCGCTCAGTCAACTGTCCAACGAGATTAACAGCGACTTTCTGTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-850 Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; eye; and testis.

Ensembl:

ensembl_id ENSDART00000183839

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043668 lncRNA downstream 18198 3752862 ~ 3759457 (-) False XLOC_022103
TCONS_00043672 lncRNA downstream 18219 3757789 ~ 3759436 (-) True XLOC_022103
TCONS_00044944 lncRNA downstream 47049 3728090 ~ 3730606 (-) True XLOC_022102
TCONS_00043663 lncRNA downstream 96701 3673709 ~ 3680954 (-) True XLOC_022100
TCONS_00044943 lncRNA downstream 326276 3450998 ~ 3451379 (-) True XLOC_022098
TCONS_00043691 lncRNA upstream 1114898 4916969 ~ 4925131 (-) False XLOC_022113
TCONS_00043692 lncRNA upstream 1115845 4917916 ~ 4925609 (-) False XLOC_022113
TCONS_00043693 lncRNA upstream 1116327 4918398 ~ 4925131 (-) False XLOC_022113
TCONS_00043704 lncRNA upstream 1317661 5119732 ~ 5126166 (-) True XLOC_022117
TCONS_00044713 lncRNA upstream 1388706 5190777 ~ 5199754 (-) True XLOC_022118
TCONS_00043666 mRNA downstream 17963 3751458 ~ 3759692 (-) False XLOC_022103
TCONS_00043665 mRNA downstream 18144 3751451 ~ 3759511 (-) False XLOC_022103
TCONS_00043669 mRNA downstream 18310 3752979 ~ 3759345 (-) False XLOC_022103
TCONS_00043667 mRNA downstream 18831 3752836 ~ 3758824 (-) False XLOC_022103
TCONS_00043671 mRNA downstream 18939 3757218 ~ 3758716 (-) False XLOC_022103
TCONS_00043674 mRNA upstream 147477 3949548 ~ 4019928 (-) True XLOC_022105
TCONS_00043675 mRNA upstream 284422 4086493 ~ 4091009 (-) True XLOC_022106
TCONS_00043676 mRNA upstream 414125 4216196 ~ 4225606 (-) False XLOC_022107
TCONS_00043677 mRNA upstream 414320 4216391 ~ 4225830 (-) False XLOC_022107
TCONS_00043678 mRNA upstream 419771 4221842 ~ 4225606 (-) True XLOC_022107
TCONS_00043654 other downstream 721559 3055981 ~ 3056096 (-) True XLOC_022096
TCONS_00043637 other downstream 2559154 1218382 ~ 1218501 (-) True XLOC_022077
TCONS_00043618 other downstream 3156569 618553 ~ 621086 (-) True XLOC_022061
TCONS_00043611 other downstream 3288458 481027 ~ 489197 (-) True XLOC_022056
TCONS_00043689 other upstream 1114834 4916905 ~ 4925625 (-) False XLOC_022113
TCONS_00043690 other upstream 1114884 4916955 ~ 4925623 (-) False XLOC_022113
TCONS_00043705 other upstream 1408950 5211021 ~ 5365184 (-) False XLOC_022119
TCONS_00043706 other upstream 1498208 5300279 ~ 5365345 (-) True XLOC_022119
TCONS_00043707 other upstream 1629125 5431196 ~ 5431319 (-) True XLOC_022120

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000150_01038763_01087340.mRNA True 876 mRNA 0.50 4 CI01000150 1038763 ~ 1087340 (+)
bowfin (Amia calva) AMCG00008109 True 843 mRNA 0.58 2 CM030123.1 42656191 ~ 42657239 (+)