RNA id: TCONS_00044230


Basic Information

Item Value
RNA id TCONS_00044230
length 2060
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_022421
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28023091 ~ 28025943 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATACATACTTAAGAGACCCCGTCGAGAGGATCTTTTCCCTATAAAGAGAAGATGCAATCCGACCGCCTTTGAAATGATCCTCAGGACTTATTGCGACAGGCCCTTCAGTCGCACTTCAAAAGGAAGAGACCTGGTTTGAAAGACGCTGCTTTTGAAAACGAGACCCAGAAAAACAGGAGCAACAGCGCGGAGTGGCCAACAACTCTCACAGGCGAGAAAGGACAGGATTTGGAAGAGAGAATCCAAGGATTATTGATTTTTCAGCGATATATCTGAACGTACGCACCTGGCTGTGTAAGGGGGTCAACAGGATCTTTGCGCGCCTCCTCGTTCCCGCACACTGAGACTTTGGCACGGCTACGCACCGCGCGCCGCGCTTCACGCAGGTGTGGATATCTTGAAACAACCGTGAACACATGGCTGCATTAACCTTATCCAGAGCGGACAATTTCCTCCACAATTTCTTACAGGACCGCACTCCCAGCTCATCTCCAGAAAGTGGTCCAAACACCCTCTCCTTTCTGGCCACCACATGCAGTCAGGCTTGGCAGGAAGGCTCGCAGCTCCCTTACGAGGGTCCGGTGGGCTCCGCATCCAGCATGTTCCAGCTCTGGAGCAACGACGTGGCCCCGAACTCCAGCTTAAGCGCTCACCAGATGACCTTCACCGTGCCCAAAATGCAGTTTCCCAGCCACATGCAACCCACTCTGGGCTCGCACTCCCATCACCACCATCACCACCATCATCACCACCACGAGCTTCCCCTCACTCCTCCAGCGGAGCCTCCGTCTGCATATTCATTCGAGCTTTCCCCGGTTAAAATGCAAGGGAATGCGCCATACTACACGCAGCACAACGCCGTCAGTCAAAACTTTCCAAGCTTCCTCCAAAACCCCTCAGGAAGAGCTCACCTGCCTGGAGGTCACGTTGAGGATGGCCAGCAGTGGTGGAGTCTCCCCCAGGGTAACAGCGCTCCCTCCGGGCACCCTTTCTCCTTGGGACGGCAGCTGGTTTTGGGCCATCAGCCTCAAATTGCAGCACTTCTGCAGGGAACCTCCAAAGGTCTGTTGAGCTCTACTCGTCGCTGTCGCCGATGCAAATGCCCAAACTGCCAGTCCACAGGAAACGGAGGTGCTGCATTGGAGTTTGGAAAGAAAAGACTACACATTTGTCACATTCCAGATTGTGGGAAGGTTTATAAAAAAACCTCTCACCTCAAAGCGCACCTGCGCTGGCATGCTGGTGAACGGCCCTTCATTTGCAACTGGCTCTTCTGCGGGAAGAGCTTCACGCGTTCAGATGAGCTGCAGAGGCATCTCCGTACACACACCGGGGAGAAGCGTTTCGGCTGTCAGCAGTGTGGAAAACGGTTTATGCGGAGCGATCATCTCTCCAAGCATGTGAAGACCCATCAGAGCCGGAAGAGCCGGTCCAGTCAGCCTCCTCACAGCGGGACTGATGCTCTGCTGAGCAACATCAAGAGAGAGTAAAAGATGCACAAGTACTAAAAACAATATGAACAAGAGCTAAGAGAGAGAACTTTTTTAGAGTCTGGAAGTTTGGCAGTGGTGAAATGGTTGCGATGGGAGCATGGGCCTGTTTCTACTACTGTATGTTTCCTGAAAACACTGGAGTAAAGTGCTGCACCAAAACTGATGTTATAAAGACTGTAAAGAGACTTCAGGGCAAAGCACAAGTGGTGTGCGAGAGGCATTTTAGTATGCCTCATGCCCttgcacatttatttaaagacaatTTAATTCAAAATGAGAAAAAAGTATTCGTTATTTGGTGAAACTGTccttcctttgtttacattctgttgTTTGTTTTCTCTATTTTGCTTTAGGGAAAATTGATGCCTTATGTTGAAATCCTGAATTCAGAACATTTGCCAACTAAATTCTTGTTTTCTTGCAGAGAATGGCACTGCTATATTCACTCTAAATCCCTATAGTTTCAAAACAAGAACCAAatgtatataatgtttatatagCGCACAGTTCTATAAAGACCAgcatgtgtaataataataataaacacgaTCGACTGTGCAAATC

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0007498 mesoderm development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2981 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including mesoderm formation; notochord development; and post-anal tail morphogenesis. Is expressed in several structures, including forerunner cell group; mesoderm; nervous system; neural plate; and notochord. Orthologous to human SP5 (Sp5 transcription factor).

Ensembl:

ensembl_id ENSDART00000181146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045026 lncRNA downstream 227168 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 250719 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00045024 lncRNA downstream 293637 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA downstream 293637 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00044220 lncRNA downstream 327918 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00044237 lncRNA upstream 164586 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00045027 lncRNA upstream 407232 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00045028 lncRNA upstream 1159909 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00044250 lncRNA upstream 1307910 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA upstream 1329674 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00044229 mRNA downstream 147951 27862807 ~ 27875140 (-) True XLOC_022420
TCONS_00044228 mRNA downstream 165987 27835653 ~ 27857104 (-) True XLOC_022419
TCONS_00044227 mRNA downstream 166040 27835647 ~ 27857051 (-) False XLOC_022419
TCONS_00044225 mRNA downstream 200171 27800519 ~ 27822920 (-) False XLOC_022418
TCONS_00044224 mRNA downstream 321730 27697056 ~ 27701361 (-) False XLOC_022414
TCONS_00044231 mRNA upstream 71339 28097282 ~ 28120058 (-) False XLOC_022422
TCONS_00044232 mRNA upstream 85433 28111376 ~ 28123767 (-) True XLOC_022422
TCONS_00044233 mRNA upstream 113546 28139489 ~ 28141419 (-) True XLOC_022423
TCONS_00044234 mRNA upstream 159940 28185883 ~ 28239750 (-) False XLOC_022424
TCONS_00044235 mRNA upstream 159940 28185883 ~ 28294763 (-) False XLOC_022424
TCONS_00044226 other downstream 200313 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044212 other downstream 442799 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 787437 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 1201323 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 1347321 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044236 other upstream 164586 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 175017 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1159909 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1159909 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044252 other upstream 1349735 29375678 ~ 29376841 (-) True XLOC_022434

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10783090_10786991.mRNA True 1131 mRNA 0.52 3 CI01000001 10782850 ~ 10786991 (-)