RNA id: TCONS_00044233


Basic Information

Item Value
RNA id TCONS_00044233
length 710
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_022423
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28139489 ~ 28141419 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACATGTTGCTATCATTTAACAATCAGACAGGAGAGAATCCCTGTCTCTGTGTCTTGTCTGATAGATAGTCCATCACAAAAGGATTTAACTCTCCAAGCAGAAACTGGAACTGAGCTCTTTTCTACAGATCTTCATCCTCAGCTCAGAATAATCTGTAAAGATGTACCGTGGACTTGTGTTACTGTTCTTGGTTTTGGTGCTGGAAACCCGATGGAGTGAGTCGAGCTGTCAGCAGTCAGAGTCTCAAAGATCAGTTTCAAGCGAGAGTCCAAGTTTTCGGATGTCGACTCATAACTTGCTGAAGAGGTATAATGACATAGATTATGACAGTTTCGTCGGATTAATGGGGCGCAGAAACGCCGaaacagATGATATACCACCCCAACGTAAAAGGGAAATGCACGATATCTTTGTTGGACTCATGGGTCGACGAAGCGCTGAACCTGAATCCGGACGTCAATGGAGGAAAGAGTACCCAGAACCAAGCGGAGGAATCTTCTTTAACAAATGCAAACTGAGGTTTCGTCGTGGGTTATAggcaaaaaaatatttcatatccACTAAATCGTCTGCACCACCCTGTCACGACAGCTTCTTTTCAATAAACTTCTTTGGAGCAACAACAAGAAGTTATAATCTATTTTACAAAAGTGATAGAGCAACAGCAATTTATACAAGATGAATCTAATAAACATGATTTCCTATGG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0045777 positive regulation of blood pressure biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-253 Predicted to be involved in positive regulation of blood pressure. Predicted to act upstream of or within neuropeptide signaling pathway and tachykinin receptor signaling pathway. Predicted to be located in extracellular region. Is expressed in several structures, including adipose tissue; liver; male organism; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 10 with or without anosmia. Orthologous to human TAC3 (tachykinin precursor 3).

Ensembl:

ensembl_id ENSDART00000133039

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045026 lncRNA downstream 343566 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 367117 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00045024 lncRNA downstream 410035 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA downstream 410035 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00044220 lncRNA downstream 444316 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00044237 lncRNA upstream 49110 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00045027 lncRNA upstream 291756 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00045028 lncRNA upstream 1044433 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00044250 lncRNA upstream 1192434 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA upstream 1214198 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00044232 mRNA downstream 15722 28111376 ~ 28123767 (-) True XLOC_022422
TCONS_00044231 mRNA downstream 19431 28097282 ~ 28120058 (-) False XLOC_022422
TCONS_00044230 mRNA downstream 113546 28023091 ~ 28025943 (-) True XLOC_022421
TCONS_00044229 mRNA downstream 264349 27862807 ~ 27875140 (-) True XLOC_022420
TCONS_00044228 mRNA downstream 282385 27835653 ~ 27857104 (-) True XLOC_022419
TCONS_00044234 mRNA upstream 44464 28185883 ~ 28239750 (-) False XLOC_022424
TCONS_00044235 mRNA upstream 44464 28185883 ~ 28294763 (-) False XLOC_022424
TCONS_00044239 mRNA upstream 202569 28343988 ~ 28347039 (-) True XLOC_022425
TCONS_00044240 mRNA upstream 257894 28399313 ~ 28423048 (-) False XLOC_022426
TCONS_00044241 mRNA upstream 257894 28399313 ~ 28423222 (-) True XLOC_022426
TCONS_00044226 other downstream 316711 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044212 other downstream 559197 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 903835 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 1317721 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 1463719 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044236 other upstream 49110 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 59541 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1044433 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1044433 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044252 other upstream 1234259 29375678 ~ 29376841 (-) True XLOC_022434

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU22735 True 54 TUCP 0.40 1 CI01000001 10863945 ~ 10863998 (-)