RNA id: TCONS_00044235


Basic Information

Item Value
RNA id TCONS_00044235
length 1800
RNA type mRNA
GC content 0.55
exon number 8
gene id XLOC_022424
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28185883 ~ 28294763 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGAGATagggagagtgagagagaaagaaagagagtgcAGCGCAGACACCGGTTTGACTGTGCTACTGAGACATTTCTTCATGGTATCTGAGAAATGTTCCTGTTGAAGGGAAACTGTTCATCTTCTGTCTTCTGTAAAGAAGCACTGCTTGTCCTGGTGTGCCTGCAGGGATTTGGGCTCCTTCACTGATCACCGGCATTTCTGACCCCTCTCCATTTCTGGACCCTCCCCCACACTGCCCTCTGACTCACCTGAGAAAAGCCAGCAGAAGACCTGCAGATCCCTCCCCTCAGAATAGTGCTCATTcacctggagagagagagagagagagaggacgtACGAGATACAGGATGGACAACAGCTATGCTCTCTCTCACGCTGCGCTTTCAGCTTAACTCACTTCTGGTTTGGAGaagagacgcagagaggagcgcGGAGACCAACTTGTGCTCCCCTGGATTAGAATTCACGGAGTGCTGGTCCTGATCGCAGGAGCGAGGCATAAGGATGATCTTAGGAAGCATCAACCGAGCGGGGGCTGTCCCTACATTTCTGCGGACCCCCACTGTCATTCAGCCTCATCTGGATATGAAGCCCTTCCTGCAGTTTCCAATGGAGACTCCTCCGCACAGCGTTGGGCTTTTCCACAACTTCAATGCGATGGATCCTGTTCAGAAGGCAGTGATCAACCACACCTTTGGAGTCCCATTGGTGAAGACCAAACGGCCAATCATTTCCTGCAATGTCTGCCAGATCCGCTTCAACTCTGAGAGTCAGGCAGAAGCTCATTACAAGGGGAATCGTCATGCTAGAAGAGTCAAGGGCATTGAGACCTCTAAGAGCCGCCCGCAAGAGAATGACAAAACTCCTCCTGGTCCAGTCTCTTCCCCGTCACCTACCGGAGCCTTGCCGACCATCCCAGACACTGACCCCAGCAAAACAGATGAGACACGGCCAGAGCCACAGTTAAATGGACCCGCGGTGGCCCTGGGGCCCATGACAGTTTCCAATCCACCAACCCCAGAGTCCCCTGGTCCTTCTGCCTGTCCCCTTCTGCCCACCCCTACTACACCACAACCACCTCCGGCCAGCTCTTCGTCCCCCAGCTGTGGCTCTTCAAACCCAGAACAGGCAGGCACCGGGGCCCCTGGGGCTCCATCAGTCACTCCCAGCAACCCTGAGACTGAAGAGGACAAAGCCAAGAAGCTGCTTTACTGCTCACTGTGCAAAGTGGCCGTCAATTCACTCTCCCAGCTGGAGGCTCACAATAAAGGCACTAAACACAAAACCATTCTGGAGGCCCGCAGTGGACTGGGCCCCATTAAGGCGTACCCACGATTAGGTCCGAAGCCCAGCAGGGAGCAGGGAGGCGGAGCCACAGACCCCAATACTCAGGAACGCACCTTCCACTGTGAGATCTGCAACGTGCGGGTCAACTCAGAACTGCAGCTCAAACAGCACATATCAAGTCGAAGGCATCGGGACGGCGTTGCGGGAAAGCCAAACCCTCTCCTGAGCAGACACAAGAAGCACAGGGGAGCTGACCTTGCGGTAGTTCTCTTCATACAGGATCTCACCAAAGCATTAGGCGCCGGCCTCCTGCCAAGTCCCCTAGCTGTAGCTGCAGCAATGGCAGCAGCCGCCTCCTCCAATCCACTGGCTCTCAGAGCAGCAGCCCCCGCCCCCCATCCACATCATCACCTCCTACAGGCTCCGCATCTCAGCCATGCCATCTTAAGACCAGCTCCAGGGCCCATTCGCACCTCACACGGGCCAATCTTGTTCTCACCGTACTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-255 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human ZNF385A (zinc finger protein 385A).

Ensembl:

ensembl_id ENSDART00000139537

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045026 lncRNA downstream 389960 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 413511 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00045024 lncRNA downstream 456429 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA downstream 456429 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00044220 lncRNA downstream 490710 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00045027 lncRNA upstream 138412 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00045028 lncRNA upstream 891089 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00044250 lncRNA upstream 1039090 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA upstream 1060854 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00044740 lncRNA upstream 1380232 29674995 ~ 29706359 (-) True XLOC_022440
TCONS_00044233 mRNA downstream 44464 28139489 ~ 28141419 (-) True XLOC_022423
TCONS_00044232 mRNA downstream 62116 28111376 ~ 28123767 (-) True XLOC_022422
TCONS_00044231 mRNA downstream 65825 28097282 ~ 28120058 (-) False XLOC_022422
TCONS_00044230 mRNA downstream 159940 28023091 ~ 28025943 (-) True XLOC_022421
TCONS_00044229 mRNA downstream 310743 27862807 ~ 27875140 (-) True XLOC_022420
TCONS_00044239 mRNA upstream 49225 28343988 ~ 28347039 (-) True XLOC_022425
TCONS_00044240 mRNA upstream 104550 28399313 ~ 28423048 (-) False XLOC_022426
TCONS_00044241 mRNA upstream 104550 28399313 ~ 28423222 (-) True XLOC_022426
TCONS_00044242 mRNA upstream 188017 28482780 ~ 28487153 (-) False XLOC_022428
TCONS_00044243 mRNA upstream 188514 28483277 ~ 28486893 (-) True XLOC_022428
TCONS_00044226 other downstream 363105 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044212 other downstream 605591 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 950229 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 1364115 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 1510113 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044248 other upstream 891089 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 891089 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044252 other upstream 1080915 29375678 ~ 29376841 (-) True XLOC_022434
TCONS_00044280 other upstream 1747726 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044283 other upstream 2222436 30517199 ~ 30698676 (-) False XLOC_022453

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_10896443_10925951.mRNA True 2109 mRNA 0.53 9 CI01000001 10896208 ~ 10925951 (-)