RNA id: TCONS_00044232


Basic Information

Item Value
RNA id TCONS_00044232
length 788
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_022422
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28097282 ~ 28123767 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTTTCACTCTCTTCACACGCGCCTGTGCTCTTGAGGCAATTAAATGGATTTTGGATTTACTCGGTTTTTAGGGCAATTATGCGTGTTGTAAATAGGAAAGCAGTGGTGGTTTTGCTGGTGCTTTTGCCACTTACAGCTATGTACTTTTACTACTGGAATTTAAACAGCATTACAACCATCAATGTGCTCCAAGGACCTGActctttaaaaatgattttagagAAAAGGTCACAAAGTTTGCAACACACAAATGACCACATCCCTTACCAAATCAAAGACGACGTCTTCAAAAGTCTTGCCTTAAACGGGTGTGTCTGTGAAGGCAACAAACCAGGCATCACGTTCCCATTTTCTAAACTGTTGTTCCCTGAAATATCGGCTACTAGGCTAGAAGCAATGTTTGACGATTCAGACCTGCAAAAAGCAAAGCAATACAGAAGTAAAGAGTACCAGCGTTATCGTAAAAGggCATATACAGCTGCAGATTCCCTCATCTTATCTGAAGCCAACAGCCCTCTTCAGTACCCTACGCAGGGTGTGGAAGTCAGACCTACAAGGTCCATTCTAattccagGTTTAAGTCTGAACCAAAAATCAGAAAAGGGCCCTTATTTGGTAGATCTGATTGCTACTATGGGAATATTCAGCACAGCAGCAGTGGTCGATGGAGTACAAGTGGAAGGGGAAGGAGAGATGCAGATTCATTTTATGAGCAGATCACTTGCTTCACTAAACAGACAACTCGAGTTTGTTACCTATACAAACACACGGTTCCATCCCAACACA

Function

GO:

id name namespace
GO:0001574 ganglioside biosynthetic process biological_process
GO:0030259 lipid glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1462 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

Ensembl:

ensembl_id ENSDART00000142514

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045026 lncRNA downstream 315453 27788369 ~ 27795923 (-) True XLOC_022417
TCONS_00045025 lncRNA downstream 339004 27770481 ~ 27772372 (-) True XLOC_022416
TCONS_00045024 lncRNA downstream 381922 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA downstream 381922 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00044220 lncRNA downstream 416203 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00044237 lncRNA upstream 66762 28190529 ~ 28226719 (-) False XLOC_022424
TCONS_00045027 lncRNA upstream 309408 28433175 ~ 28453703 (-) True XLOC_022427
TCONS_00045028 lncRNA upstream 1062085 29185852 ~ 29257716 (-) True XLOC_022432
TCONS_00044250 lncRNA upstream 1210086 29333853 ~ 29358214 (-) False XLOC_022433
TCONS_00044739 lncRNA upstream 1231850 29355617 ~ 29357759 (-) True XLOC_022433
TCONS_00044230 mRNA downstream 85433 28023091 ~ 28025943 (-) True XLOC_022421
TCONS_00044229 mRNA downstream 236236 27862807 ~ 27875140 (-) True XLOC_022420
TCONS_00044228 mRNA downstream 254272 27835653 ~ 27857104 (-) True XLOC_022419
TCONS_00044227 mRNA downstream 254325 27835647 ~ 27857051 (-) False XLOC_022419
TCONS_00044225 mRNA downstream 288456 27800519 ~ 27822920 (-) False XLOC_022418
TCONS_00044233 mRNA upstream 15722 28139489 ~ 28141419 (-) True XLOC_022423
TCONS_00044234 mRNA upstream 62116 28185883 ~ 28239750 (-) False XLOC_022424
TCONS_00044235 mRNA upstream 62116 28185883 ~ 28294763 (-) False XLOC_022424
TCONS_00044239 mRNA upstream 220221 28343988 ~ 28347039 (-) True XLOC_022425
TCONS_00044240 mRNA upstream 275546 28399313 ~ 28423048 (-) False XLOC_022426
TCONS_00044226 other downstream 288598 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044212 other downstream 531084 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044197 other downstream 875722 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 1289608 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 1435606 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044236 other upstream 66762 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 77193 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1062085 29185852 ~ 29257404 (-) False XLOC_022432
TCONS_00044249 other upstream 1062085 29185852 ~ 29257561 (-) False XLOC_022432
TCONS_00044252 other upstream 1251911 29375678 ~ 29376841 (-) True XLOC_022434

Expression Profile

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