RNA id: TCONS_00044409


Basic Information

Item Value
RNA id TCONS_00044409
length 775
RNA type processed_transcript
GC content 0.54
exon number 7
gene id XLOC_022519
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35244378 ~ 35347738 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACACAGCTCAACTTCACTGTAGCCATAGACTTCACCGCGTCTAATGGAAACCCATCCCAGCCGACGTCGCTTCACTACATGAACCCGTATCAGCTGAATGCGTACGCCATGGCCCTCAAAGCCGTGGGGGAAATCATCCAGGATTATGACAGTGACAAACTCTTCCCTGCCTACGGCTTTGGAGCCAAACTCCCTCCTGATGGCAAGATCTCTCATGCTTTTCCCTTGAACTCGGACTGTGAAAATGCGAACTGCGTCGGCATTGAAGGTGTGCTGGAGGCATATTACGACTGTCTGCGGAAAGTGCAGCTCTACGGCCCCACCAACTTTGCCCCTGTCATCAACCAGGTGGCCCAGTGCGCTTCAGAAGTGACAGATGGCTCACAGTATTTCGTGTTGCTGATCATCACAGACGGTGTGATTTCCGACATGGTGCAGACTAGGGAAGCCGTGGTCACTGCGGCGTCTCTGCCGATGTCCATCATCATTGTGGGAGTCGGGCCTGCTGAATTTGACGCTATGGAGGAGCTGGATGGAGACGAGGTCAGGGTATCCTCCAGGGGACGAGTCGCTGAAAGAGACATCGTCCAGTTCGTGCCGTTCCGGGACTACATTGACCGATCGGGGAATCAGGTGCTCAGCATGGCCCGTCTGGCTAAAGATGTCCTGGCCGAGATTCCTGACCAGCTGCTCTCCTTTATGAAGACCAGAGGCATCGAACCCAGACCAGCCCTCAATCCTTCTCCGACACCACAGATAAACGTCCACCTCTGA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-49 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE9 (copine family member 9).

Ensembl:

ensembl_id ENSDART00000161003

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045063 lncRNA downstream 41294 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044744 lncRNA downstream 476227 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1480103 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 1494058 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044385 lncRNA downstream 1505267 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00044416 lncRNA upstream 136662 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045064 lncRNA upstream 283915 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 407407 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045066 lncRNA upstream 407407 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00044436 lncRNA upstream 764351 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044408 mRNA downstream 48470 35187683 ~ 35195908 (-) True XLOC_022517
TCONS_00044405 mRNA downstream 161884 35027753 ~ 35082494 (-) False XLOC_022516
TCONS_00044403 mRNA downstream 174573 35027177 ~ 35069805 (-) False XLOC_022516
TCONS_00044404 mRNA downstream 177430 35027753 ~ 35066948 (-) False XLOC_022516
TCONS_00044407 mRNA downstream 177562 35051159 ~ 35066816 (-) True XLOC_022516
TCONS_00044411 mRNA upstream 3433 35259878 ~ 35347714 (-) True XLOC_022519
TCONS_00044413 mRNA upstream 105279 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044412 mRNA upstream 105279 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044414 mRNA upstream 106330 35362775 ~ 35396871 (-) False XLOC_022520
TCONS_00044415 mRNA upstream 132821 35389266 ~ 35396845 (-) False XLOC_022520
TCONS_00044402 other downstream 1258013 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1275390 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1499607 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 1942959 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 2025250 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044432 other upstream 608281 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 742102 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 1065565 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 1157253 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 1253552 36509997 ~ 36510119 (-) True XLOC_022543

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02755511_02767404.mRNA True 2045 mRNA 0.47 13 CI01000001 2754993 ~ 2767725 (+)