RNA id: TCONS_00045136


Basic Information

Item Value
RNA id TCONS_00045136
length 1792
lncRNA type read_through
GC content 0.48
exon number 12
gene id XLOC_022632
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 43244091 ~ 43289451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCAAAAAGTGCGCGAATAAAGTTCTGACGTAGGAGCCGTTCAGTAATGGCGTCGGTCAGTGTTGCTGGAAGATTACCGGCGTCTTTCTTCGTCCTGGACGCTTCAGAGCCTTCAGCACCATCAAGCAGCTGAACACTTTAATGCTCAAAAAAATAACAAGCTCTGGCAAAAGTAACTGATGAAGTTGAATGATGCTCACTGACACAATCAAGCTTGAACAGATGACCAGAATCCACCCAAAGACTGAGAAGGAGATCCTGTATTTCATGGGTTTGAGCTTCAGGAAAGTCACAGGATGGAAAACCGCGATGTATCGCTCCACACAGATGCAACTTTGAAACAGAGGACGACCCACCACCAGCACGACTCCAGGAAAGTATACTCCAAACTTGCATTGAGTACAATTAAAGAAGTACTGCTGTATGATAAACACAAAAGAGGCGCAGAAGACGATCTCGACAAGTGCTGTGTTGAAGACGAAGATTTCAGTGGACTGTCCTTGAATCATCTCCTTCACGCTCAGCCAAAGGACATAACAGTTTGCTGGAAGACCAAGAGCTATGTTGATGCTGATGGAGACGGCGATAAAATAGGAGGGGAAAACATAGCACGAGCTGGAGTTCACAGAGAAAACTGATGGTTTTCACTCTGTCTTCAGtgaaacaaaccaaacaaagcGTTACTGGCAGAAGAAAGCTCCACTCAGTCCAGTGAAGgcaaaggagaaagaaatgattgaggaacaggcagggcagggtcagtcagatgtgcagtgtcagTTTGATGTACTCCACCACGTCAGCGTTCACCTCCGCATACACGAACGGGACGTCGAATTTGAAGCGATGGATGAATGACCTGTGCAGGCGACAGCAGCAAACACCCAGCACTGTCCGTAACGCACCGCCCTGCAGCCCTCATTACTCCACTGACGGAGGATCGAGCAGCTGTCCTTCCACACGATGACATTACAAAGTCTTAGCTGTGGATGTTTATCGTGATGCTTAAGATGGTTAATGCTCTGCGTGTGGCTCGTGTTGGGTCGTCTTCAGCTGGTGTTGGGGTCACTGAGGGATATTTTGGGCTTTGCGTCCTAATGTTACGCTGGTGTCAGAGGACCAAGACTTCAAACCCCGGCGCTTATTTGTGACATTTCCGTCTTCTACCAAACACTGACGGCATTAAATCACATTACAGCATGTCATGTTACATCCAGAACTTCCAGAAACAGCAGGAAGATGCCCATGCAGTTCCTCAAATCTGCCTTTCAAGATGACAAGTTAGATGATTGGTCCACAGATGAGGGCAGGAGAGCTGTAATGGATGGAGTGAGCAGGTGACGCTGAAGATCTGGAGTGAAGCAATGATGAAACTGATGACCTTCGACGTCCTGTGGAGCAGACGCTGGGAGACATCGAGCCCCGCCCTGAAGAAGAAGATGATTGGCTGCCTGCAGTTGATGTGGTGCTGCCAGAGCCAATGGAATCTGGCCGTGGTAAAGCCCCGCCCCTCTGAAGGCCAGACACCAGAGGATTGGGTGTTTTCAGTATTCCTACGAGTTCTGTCAGAAGAGAAAAGTCACAGAAAGTTCAGtgtgtgattggctgataaataCCTCTTCCTGTGACATCACCATTCACAgtgtgattgacagctgcgttTCTGGGCTGAATGTCTACAAAAGGTTTGCAGCCGGTTCCCATGAACAACCTCTCCTGTCTCCTCAACTCTGAAACACAAAAATCAGCAAGTCTTGTCAATCTGTGGAGATATATCCTCAAACAATTGTG

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0009566 fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:2000243 positive regulation of reproductive process biological_process
GO:0007338 single fertilization biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0032190 acrosin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044563 lncRNA downstream 337563 42900936 ~ 42906528 (-) True XLOC_022630
TCONS_00044562 lncRNA downstream 341710 42894135 ~ 42902381 (-) False XLOC_022630
TCONS_00044561 lncRNA downstream 346276 42884603 ~ 42897815 (-) False XLOC_022630
TCONS_00045133 lncRNA downstream 412929 42828633 ~ 42831162 (-) True XLOC_022628
TCONS_00045132 lncRNA downstream 616649 42622345 ~ 42627442 (-) True XLOC_022625
TCONS_00044758 lncRNA upstream 375961 43665412 ~ 43668843 (-) True XLOC_022640
TCONS_00044759 lncRNA upstream 594418 43883869 ~ 43884804 (-) True XLOC_022642
TCONS_00045139 lncRNA upstream 639047 43928498 ~ 43930231 (-) True XLOC_022643
TCONS_00045140 lncRNA upstream 699788 43989239 ~ 43991737 (-) False XLOC_022644
TCONS_00045144 lncRNA upstream 699788 43989239 ~ 43992456 (-) False XLOC_022644
TCONS_00044560 mRNA downstream 360569 42836125 ~ 42883522 (-) True XLOC_022629
TCONS_00044559 mRNA downstream 367495 42836125 ~ 42876596 (-) False XLOC_022629
TCONS_00044557 mRNA downstream 433427 42765700 ~ 42810664 (-) True XLOC_022627
TCONS_00044555 mRNA downstream 491541 42726161 ~ 42752550 (-) False XLOC_022626
TCONS_00044566 mRNA upstream 11441 43300892 ~ 43307237 (-) True XLOC_022633
TCONS_00044567 mRNA upstream 31452 43320903 ~ 43393589 (-) False XLOC_022634
TCONS_00044568 mRNA upstream 72074 43361525 ~ 43393083 (-) True XLOC_022634
TCONS_00044569 mRNA upstream 115754 43405205 ~ 43454523 (-) False XLOC_022635
TCONS_00044570 mRNA upstream 117738 43407189 ~ 43424510 (-) False XLOC_022635
TCONS_00044564 other downstream 118145 43021194 ~ 43125946 (-) True XLOC_022631
TCONS_00044558 other downstream 367606 42836125 ~ 42876485 (-) False XLOC_022629
TCONS_00044554 other downstream 729089 42508734 ~ 42515002 (-) True XLOC_022624
TCONS_00044552 other downstream 840411 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044546 other downstream 1481165 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044573 other upstream 241150 43530601 ~ 43530715 (-) True XLOC_022637
TCONS_00044578 other upstream 720974 44010425 ~ 44010541 (-) True XLOC_022645
TCONS_00044606 other upstream 1534632 44824083 ~ 44838825 (-) False XLOC_022660
TCONS_00044607 other upstream 1537106 44826557 ~ 44829277 (-) True XLOC_022660
TCONS_00044611 other upstream 1572401 44861852 ~ 44871940 (-) False XLOC_022661

Expression Profile

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