RNA id: TU1556693


Basic Information

Item Value
RNA id TU1556693
length 323
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC110492868
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29955527 ~ 30543872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagacattaaaaccaggGTCCGATTTAGCTGTAATCTATGCTGAGGTGAAGTTGAAGTGAACAGCCAAAGTCAGGAGCCGACCTTTTCGACTGGAGATGGAAAAAGTGTTGTCGTGAgcgggagagaagaagagaagagaattgaagagagagagaaagggagaaaaaaaaagaaactaACCTACCTATAGCCTTTACTTAGTGACGCCTCACAGCAGGACATTTGACAGAATCTAAAATCATTCAACCCAAGACGGACACGGACGAGGCAGTGTGGAGCAGGCAATGTTGTGGAGTGTGGGTTTCGGTGGCAGGATGACGG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0060122 inner ear receptor cell stereocilium organization biological_process
GO:0050957 equilibrioception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0007605 sensory perception of sound biological_process
GO:0035678 neuromast hair cell morphogenesis biological_process
GO:0042891 obsolete antibiotic transport biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0042895 obsolete antibiotic transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1557027 lncRNA downstream 25673 30464224 ~ 30464940 (-) True G1362436
TU1557025 lncRNA downstream 28760 30461326 ~ 30461853 (-) True G1362434
TU1557024 lncRNA downstream 29562 30460819 ~ 30461051 (-) True G1362433
TU1557017 lncRNA downstream 40093 30450237 ~ 30450520 (-) True G1362426
TU1557011 lncRNA downstream 50199 30440157 ~ 30440414 (-) True G1362420
TU1557277 lncRNA upstream 156483 30700280 ~ 30700498 (-) True G1362678
TU1557285 lncRNA upstream 162540 30706337 ~ 30706536 (-) True G1362686
TU1557288 lncRNA upstream 163651 30707448 ~ 30707686 (-) True G1362689
TU1557292 lncRNA upstream 165166 30708963 ~ 30709673 (-) True G1362693
TU1557293 lncRNA upstream 166074 30709871 ~ 30710327 (-) True G1362694
XM_021567341.2 mRNA downstream 356612 29955606 ~ 30134001 (-) False LOC110492868
XR_005036503.1 mRNA downstream 617031 29855177 ~ 29873582 (-) False LOC110492894
XR_002469089.2 mRNA downstream 627540 29855177 ~ 29863073 (-) False LOC110492894
XM_021565563.2 mRNA downstream 788020 29674817 ~ 29702593 (-) True LOC110491798
XR_002468903.2 mRNA downstream 1066960 29412471 ~ 29423653 (-) False LOC110491794
XM_021565574.2 mRNA upstream 380808 30924605 ~ 31019310 (-) False LOC110491806
XM_021565575.2 mRNA upstream 380808 30924605 ~ 31019310 (-) False LOC110491806
XM_021565569.2 mRNA upstream 380808 30924605 ~ 31019311 (-) False LOC110491806
XM_036946710.1 mRNA upstream 380808 30924605 ~ 31019312 (-) False LOC110491806
XM_021565570.2 mRNA upstream 380808 30924605 ~ 31019313 (-) False LOC110491806
TU1556170 other downstream 565459 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 993058 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 2309673 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 2326386 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2962476 27527163 ~ 27528137 (-) True G1359412
TU1558520 other upstream 1095640 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 1341952 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 1474997 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2090668 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 2090766 32634563 ~ 32635511 (-) True G1365099

Expression Profile