RNA id: TU1555882


Basic Information

Item Value
RNA id TU1555882
length 1343
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1361360
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29647268 ~ 29652024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATTTCAACATTGAAATatagaaataaacacttttccaaaaacaaggtctaaatcatgtttgatgcactctggatatattttttttgctgtactgtttattCAGGATGAtatgaacactgtggacaatgttcatttcatctcaaatagacagcacagaaataaattggacatccagagtgcatcaaacatgatttagagcttgtttatggaaaaagagtgttttctgtatttcaatgttgcaacttgctgaaaactgtccacaatgttaatttcatctcaaatagacagcacagcaaaaattggacatccagagtgcatcaaacatgatttagagcttgtttatggaaaaagagTGTTTTCtgaatttcaatgttgcaacttgctgaaaactgtccacaatgttcatttcatctcaaatagacagcacagcaaaaattggacatccagagtgcatcaaacatgatttagagcttgtttatggaaaagaaaaaatctgtatttcaatgttgcaacttgctgaaaactgtccacaatgttcatttcatctcaaatagacagcacagcaaaaattggacatccagagtgcatcaaacatgatttagagcttgtttatggaaaaagagTGTTGTCtgaatttcaatgttgcaacttgctgaaaactgtccacaatgctcatttcatctcaaatagacagtacagcaaaaattggacatccagagtgcatcaaacacgatttagagcttgtttatgaaaaaaaacaacgttttttctatatttcaatgttgcaacttactgaaaactgtccacaatgttaatttcatctcaaatagacagcacagcaaaaattggacatccagagtgcatcaaacatgatttagagcttgtttatggaaaacaacgttttttctgtatttcaatgttgcaacttgcaacttgacatcatttgagtcaattacaggtgtacctgaggatgtatttcaaggcctacgttCAAAcgttgcctctttgcttgacatcatgggaaaatcaaaagaaatcagcctagACCTAAGAGAAAAAATTGTAgtccctccacaagtctggttcatccttgggagcaatttccaaatgcctaaaggtaccacgttcatctgcacaaacaatagtacgcaaatttaaacaccatgggaacacgcagccatcataccgctcaggaaggagacacactctgtctcctagagatgcgcgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccctgtgacgatgctggaggaaacagatacaacagtttctatatccacagttaaactagtcctatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1555820 lncRNA downstream 119481 29521207 ~ 29527787 (-) True G1361309
TU1555810 lncRNA downstream 135660 29511402 ~ 29511608 (-) True G1361303
TU1555809 lncRNA downstream 135964 29510890 ~ 29511304 (-) True G1361302
TU1555808 lncRNA downstream 138081 29508913 ~ 29509187 (-) True G1361301
TU1555804 lncRNA downstream 143612 29503444 ~ 29503656 (-) True G1361297
TU1555932 lncRNA upstream 12183 29660930 ~ 29661149 (-) True G1361403
TU1555969 lncRNA upstream 48651 29697398 ~ 29731275 (-) True G1361433
TU1555994 lncRNA upstream 91980 29740727 ~ 29740966 (-) True G1361458
TU1556005 lncRNA upstream 106776 29755523 ~ 29818857 (-) True G1361468
TU1556050 lncRNA upstream 170600 29819347 ~ 29819603 (-) True G1361508
XR_002468900.2 mRNA downstream 223615 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA downstream 223615 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA downstream 223615 29412471 ~ 29423653 (-) False LOC110491794
XR_005036500.1 mRNA downstream 880266 28626132 ~ 28767002 (-) True afap1l2
XM_036946702.1 mRNA downstream 880267 28626132 ~ 28767001 (-) False afap1l2
XM_021565563.2 mRNA upstream 26070 29674817 ~ 29702593 (-) True LOC110491798
XR_002469089.2 mRNA upstream 206430 29855177 ~ 29863073 (-) False LOC110492894
XR_005036503.1 mRNA upstream 206430 29855177 ~ 29873582 (-) False LOC110492894
XM_021567341.2 mRNA upstream 306859 29955606 ~ 30134001 (-) False LOC110492868
XM_036946709.1 mRNA upstream 306859 29955606 ~ 30543872 (-) False LOC110492868
TU1555797 other downstream 149713 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 1466328 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1483041 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2119131 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 2287706 27357284 ~ 27359562 (-) True G1359321
TU1556170 other upstream 275124 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 1990690 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 2237002 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2370047 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2985718 32634465 ~ 32635511 (-) False G1365099

Expression Profile