RNA id: XM_036948125.1


Basic Information

Item Value
RNA id XM_036948125.1
length 7176
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110493417
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13346096 ~ 13370709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCATTCGCGTCATCACGGCTACCCGGAACACATAGAGATTGGAAGCCACGTTGACAACGAAGTGGTGTTTTGTTTCATTCCAAAACCGGTGGAATAACGGTAACTGCACCGGTGTGTCTGTCCAGCGGCCAAAGGGGTTGAAAATCGTACAGAAGGACAAGCCACTTCACCGGAAAGATGAGTGTAGGATTCATCGGAGCCGGCCAGCTGGCTCACGCGCTGGTGAAAGGGTTCACATCTGCGGgtgTAATAGCTACTCAGAGAATCATAGCCAGTTCTCCAGATACTGATCTGCCTACTGTTGCTGGCCTGAGGaaAATGGGTGCTATCCTCACCACCAGTAACAAGGAAGTGGTGAACAAGAGTGATGTCCTGTTCCTGGCAGTCAAACCCCACATCATCCCCTTTGTGCTGGATGAGATTGGACCAGACATCGAGGACAGACACCTTATAGTGTCCTGTGCTGCAGGAGTCACCATCAGCTCTATAGAGAAGAAGCTGCTTCAGTACCGTCCGTTCCCCAAGGTGATGAGGTGTATGACCAACACCCCCGTCGTGGTGAGAGAGGGAGCTACAGTCTACGCTACAGGaacacatgctgaggtGGAGGATGGTAAGTTGTTGGAACAGCTGATGGCCAGTGTTGGGTTCTGTacagaggtggaggaggaccTTATCGATGCCGTCACCGGCCTCAGTGGCAGCGGCCCCGCCTACGCGTTCACAGCTCTGGATGCCCTAGCCGATGGAGGGGTGAAGATGGGTCTACCCAGGAGACTAGCGGTCAGACTGGGAGCTCAGGCACTACTGGGAGCAGCTAAGATGTTGTTGGACTCTGAGCTGCACCCTGGCCAGCTGAAGGACAACGTGTGTTCCCCTGGGGGAGCCACCATCCACGCCCTGCACGTGATGGAGAGTGGCGGATTCCGCAGTCTGCTCATCAACGCCGTGGAGGCTTCTTGTATCAGGACACGTTCCTAGCGGACCAGGAGCGCATCTCCCCGGCAGCCATTAAGAAGACCACCCTGGACAAGGTCCTGCAGCAGCCTGGGGTCagccaggggtcaggggtcaacgGCAAGCCAGGACTCAGCCTCAGGAGAAACCCCCCAGGACCTGTCAAGAAGAACAACTGAGATGGAGACACGCACACACCACCTATAACACCAGGAATCCGCGTCAGGAGAAACCCCCCAGGACCTGTCAAGAAGAACAGCgatggatggacacacacacacacacacatactctctttctctcaaaatTTGGAAATGCAGCTTGCACAGACCCATAGCCTTGTCTGACAGGGAGTCCGTGTACACACAAGTGAACAGAAATGCATGTACAACATGCCGCCTGTCTACCTTGTCTTCAGTCTGTCTGAGGATGTGTGTCTCCGCGGTGATAACGACCCAATGGGCCAAAACATCAGTGAATATTTCAGATAGAAATGCAATGCATAGAGCTGACATGATTCCTTATTCTGCATGACAGAGGAATTCATAGAATCTGTTCTTTGCAATGCATTTCTTTCTGAGCGTTTTCTTTTTAATGTTGCCCCTGCAGCCGAAGCAGGCAACAAATGGCTTCAGTGATGTATTTTTTTGCCTGATgactcaaactgaattcttcCCACTGCTCTGTTCACTGCAAACGTTTAAGTTGTTTGTGGTGACGTCATAATGAGGGATGTTGTACAAAAGTGATCAGCGATTGGATCACCTCGAACCAATCAGAGCATCAAAGCCaatgacaatttttttttaaaaacacctCTTTACTCACGTGTGCTTTgactctggcccaacccatttGTTTCTGGGACCAATCGGAACCTTTGTGTTCAGGAAAACCTGTCAGGGGCGGgatactcagatccagactcatggCGGAGAATTAATGCTAGTGGCCTAGCGTTTTCACGGGAGCAAGGCGTTTGGGTACCTAGGCAAGCCGTTTCTAAGGtagtgtcccaaattgcaccctattctcccCCTCCCCAATAggggtcaaaggtagtgcactataaaggaaataggctgccatttgggatttaCACCAAGTGTACTATACAGACAGTTACAATGTATTTTCTATGAAGCCAGATCATGCCATGAAAAGCCTTTTATTTGGCTTGTTGTGATTTTCTTGTCGTTATTCTTGACCtacagtgttattttatggactGACTGAACAACAACTGTTTtgagtttttgtttttttacatattCTATTGTCCGTATGTTAAATAAACACTAGCCACCAGACGAGTGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAACTGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAACTGAACACTAGCCACCAGACAACTGAACACTAGCCACCAGACAACTGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAACTGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACAGTAGCCACCAGACAAGTGAACAGTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATGAACACTAGCCACCAGACAAATAAACACTAGCCACCAGACAAATGAACACTAGCCACTAGTAATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAACCCATACCTGGAGACGTGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAATGTGATGTAACAATCTGATCATCTGCATAGATTACCAGAACTAAACCAGACCTGGAGACATGTTCAACATCTCAGTAACCACAGCAACGTGATGTAACAATCTGATCATCTGCAGACATGTTCTGTCTATCTGTTAAGTGAGGAAGACTCATCCTTCAGTGAAGATGCTACCATGTTATTATGTCTCTCTGAAAGGGAACGTGGGATTTAACCTTCCAGTATATTTACTTTATCTCTGTCGTCAGTCACTTTAACATGGAACTATTCATTTGTATGTTTTGATACTGATTAGGAAAATGTGTATGGTCAATTACCAAAGGCTCTGTCCTACATTGTATAATGAGTTAGCATATGGTAGTGAAAGGAGGCAAGTCGAGGAAGCTACCTACCATAGAGTATTGGGATGCAGCCCAGCTCTAGCTGGTCAGTTGTTTCAACTCGGCATCTGGAGACACGGGGGAAGTCACAGTATATGAacgtgtgtgtgtccccccctgTTGCCTTGACAAGTACAGTTCTACAGATGTCATGGCCCGTCATCGTCACATACTCAACGGGGGACAGACGGGGTAAAGTTTCAACCCCAGTGCCCCCACGGATACAAATAGACATTTGTGAAGAGTGGCTGTGTACCAAAtgtaccaccctattccctacatagtgctctgAGGGTCCTGGTCCAGTGTTGTCTACTATACAGGGAATGTGGTGGCATTTGGGAGTCAGGATGTAGACAGTTTTTCCCTCGCTGCCATAGATACGGATTCTGATTGGTTGGCGAGGGAGGAAACGAGCCGCCGGTTTTAGAACCCTGTCGGCAATCTGAAGGAGGTGGGTGACATGTCAGGTCCAGGAGAGGTTCAGGTCAGGGTGGATGtggcattctattccctatatagtgcaacaCTTCTGACTAGGAcccatagggctgtggtcaaaagtagtgcactaggaaaTGTGGGTGCCAATGAGCATGCACAGACTGGCTCTTGGGGTTACCCAAGGTCAACATCTACTTTTTGGTGGCACATTGCTATTTAGATTGTAATGGGGGTGACCCCCAGCCCTCCTGCAATTCAAATCATGGTTCATTTcctgtctttttttctctccttttatACTCTACTTTTAAAGTCAAACTAAAATAAAGTCATCCAAGTTCATTTTACTTCTACAATAACTTTTATATTACCTTCAACAATATGACGGGACACAGGCCAATTGTTTGTTTGCCTCTGAAATGTGACTGCAGAAGACCATGTTGTGTGAGAGTTGTCCTCCACGGCGTGTCCATTGTAAAGTCTGCAGTTTGATTAGACGACATACTTTACGAGGCGCCAGGTGTAGAAGGTAATGACAATATGCAGGAAAACCGCGGAGACAAGCGGCTGTGGAGATAAATGTTCCCCAATCACAGCGGAACAATACTAACCGCTTGCAGCCTACAGGATTACCTAGATTACGGTTAAAAGTGGCCTTtgattaaagtgtgtgtgtaaaaaaataaaaataaaggccTTGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627433 lncRNA downstream 81754 13263291 ~ 13264342 (-) True G1421879
TU1627431 lncRNA downstream 83384 13261319 ~ 13262712 (-) True G1421877
TU1627373 lncRNA downstream 124677 13221121 ~ 13221419 (-) True G1421830
TU1627410 lncRNA downstream 168784 13176464 ~ 13177312 (-) False G1421861
TU1627491 lncRNA upstream 6201 13376910 ~ 13398358 (-) True G1421925
TU1627512 lncRNA upstream 65224 13435933 ~ 13436335 (-) True G1421945
TU1627546 lncRNA upstream 102221 13472930 ~ 13496270 (-) True G1421977
TU1627549 lncRNA upstream 108582 13479291 ~ 13482072 (-) True G1421978
TU1627526 lncRNA upstream 115258 13485967 ~ 13497449 (-) True tmc6b
XM_036948148.1 mRNA downstream 6391 13303807 ~ 13339705 (-) False LOC110485496
XM_036948321.1 mRNA downstream 45567 13286956 ~ 13300529 (-) False LOC110485492
XM_036948105.1 mRNA downstream 59802 13280562 ~ 13286294 (-) False LOC110485494
XM_036948106.1 mRNA downstream 60174 13280562 ~ 13285922 (-) False LOC110485494
XM_036948107.1 mRNA downstream 91247 13222056 ~ 13254849 (-) False pcyt2
XM_021567674.2 mRNA upstream 7466 13378175 ~ 13380398 (-) True LOC110493418
XM_036947989.1 mRNA upstream 88912 13459621 ~ 13497672 (-) False tmc6b
XM_036947992.1 mRNA upstream 88912 13459621 ~ 13497672 (-) False tmc6b
XM_036947990.1 mRNA upstream 88912 13459621 ~ 13498404 (-) False tmc6b
XM_036947991.1 mRNA upstream 88912 13459621 ~ 13501211 (-) False tmc6b
TU1627370 other downstream 6517 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 45678 13298691 ~ 13300418 (-) True LOC110485492
TU1627369 other downstream 47903 13296936 ~ 13298193 (-) False LOC110485492
TU1627444 other downstream 60593 13281814 ~ 13285503 (-) False LOC110485494
TU1627585 other upstream 210231 13580940 ~ 13581565 (-) True G1422007
TU1627536 other upstream 262499 13633208 ~ 13635001 (-) True LOC110485508
TU1627681 other upstream 401430 13772139 ~ 13781040 (-) True LOC118940035
TU1627736 other upstream 486167 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 486167 13856876 ~ 13858250 (-) False G1422125

Expression Profile