RNA id: XM_021567674.2


Basic Information

Item Value
RNA id XM_021567674.2
length 1983
RNA type mRNA
GC content 0.53
exon number 2
gene id LOC110493418
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 13378175 ~ 13380398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagagagagagagagaggtggttttTGGGCCACATGGCTTGGTTGTCAGTGAGAGTGTGTACtgcaacagacagacacacagagagccaaAGTGTGGTCGTGGACCTAAGGACTTCAAACTTGACCATCGGAAGACAAACCAGGTGACTGGACCGGATTATATTGGATCATTACATGATATTACATACTGGGATTATGACAAACCCAAAGGTAACTCCCAGATGAGAATGTTTACTGTACTGTTCCGTCCAAGAGAAGAAAAGCTCTGACAGAGACTGAAAGAGTCCTCAGAAGAGGAACAGGTTGGCCGGCTCTTTTGAATTCAGCAGCTGGATGTAAATACTGGATTTTAATGAATGTCCAGTATTCAAAGACTCAAGAAATACATATATTATGTGTCAATTTTCTAAGGATTCAAATACGTATCAGAGGActgacaaaatatatatataaggaCACGAGAAATATATGGACTCAAGAAGATATTCTGACTACACAAGAGTGTGTCCTTTAGATGTGTCTGAACAGTGGATCAGTCCGAGCTTCTCTACACACACGTGATCCAGAGAGCGTTTCACCCACGAGGGACGGCTGCGTTCTgacctgttttctttgtgacatACCGTGAGTCGCCGACACATAAATAGAGACCCAGAAAATACCCAGAGTCCCTAGCGTCCCGGCAGAAACAGCAGAGCGAGAAGCAACCACGCACACTCACGCACAAACACACCTGGTTCATGAGTCGATACATTCAAGACTTGCTTTGTGTCGTGACGTTTTCCACTTCATCCTACTCCAGTATAGGACAGACACCCCCTTAACCCACAAACTCTcccctctgacctctaacccttgacctctgacccctgatcTCTGAACCCTGACATCTGAACCCTGACTCCTGACTATGAGCCCTCAGGGGGGTCAGTACCTCAACAAGGCAGCGGTCTTCTCCTCGCTTGGCGCCGCCCGCCTCTCCCAGCTGGCCCTGGGCTGCTCAGTGGTCGCCATGGTGAGCCACAGTGCGGGCTACAGCGGAGGGTCGTACGGCGTGTTCTGCATGGCGGTGTGGTGCGCGTGCTTCGGCATGACGACAGTGGTGTTCTTCCTGGACGCCACCCGTCTCCACGCCTGTCTGCCCGTCTCCTGGGATAACCTGACGGTGGCATTCGCCGCCGTGGCGACCCTCGTgtaTGTGACAGCCTCGGTGGTTTACCCAGTCTACTTTGTCAGAGCAGAGTGCCCCTACGGAGGCTGTGAGGTCCGGAACTTCCGCATCGCCGTCACTGTCTGCTCCATCGCCGGCTCCCTGTCCTACGGGGCCGAGGTGATCCTCTCGCGGGCCAAACCAGGCCGGGTCGTGGGCTACATGGCAACCGTCTCCGGCCTCCTCAAGGTCGTCCAGGGCTTCGTGGCGTGCATTATCTTCGGAGCGCTGGCGAACGGGACCGAGTATTCACGTCACGTAGCGACGATTTACTGCGTGGTCGTCTACGCCGTCTGCTTCGCCATGACGACTGTCGTGGTTATATTGACAGTGTCCGGTCGCACCGGGTGTCTGAAGTTACCGTTCGACcggtttgttgttgtttacacgcTCTTGGCGGTTCTCCTCTACCTCAGCGCCTCCGTCGTCTGGCCCGTGTTCTGCTTCGACAGGAAGTACGGATCGCCAGAGCGCCCGTCGTCATGCCCGCGGGGCCGGTGTCCGTGGGATAGTAAGGTGGTCGTTGCAGTGTTTAGCTTCGTCAACCTGGCGCTGTATGTCGCCGACCTGGTGTACTCACAACGGATACGTTTCATAACCCAGCAACCACGGGTGTAGAACAGAATGGgacggaacagaacagaacagaatgggacggaacagaacagaacagaatgggacggaacagaacagaacagaatgggacggaacagaacagaacagaatgggacggaacagaacagaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1627482 lncRNA downstream 26569 13349938 ~ 13351606 (-) False LOC110493417
TU1627483 lncRNA downstream 26569 13349938 ~ 13351606 (-) True LOC110493417
TU1627433 lncRNA downstream 113833 13263291 ~ 13264342 (-) True G1421879
TU1627431 lncRNA downstream 115463 13261319 ~ 13262712 (-) True G1421877
TU1627373 lncRNA downstream 156756 13221121 ~ 13221419 (-) True G1421830
TU1627512 lncRNA upstream 55535 13435933 ~ 13436335 (-) True G1421945
TU1627546 lncRNA upstream 92532 13472930 ~ 13496270 (-) True G1421977
TU1627549 lncRNA upstream 98893 13479291 ~ 13482072 (-) True G1421978
TU1627526 lncRNA upstream 105569 13485967 ~ 13497449 (-) True tmc6b
TU1627558 lncRNA upstream 119149 13499547 ~ 13499782 (-) True G1421987
XM_036948124.1 mRNA downstream 7466 13346096 ~ 13370709 (-) False LOC110493417
XM_036948125.1 mRNA downstream 7466 13346096 ~ 13370709 (-) False LOC110493417
XM_036948148.1 mRNA downstream 38470 13303807 ~ 13339705 (-) False LOC110485496
XM_036948321.1 mRNA downstream 77646 13286956 ~ 13300529 (-) False LOC110485492
XM_036948105.1 mRNA downstream 91881 13280562 ~ 13286294 (-) False LOC110485494
XM_036947989.1 mRNA upstream 79223 13459621 ~ 13497672 (-) False tmc6b
XM_036947992.1 mRNA upstream 79223 13459621 ~ 13497672 (-) False tmc6b
XM_036947990.1 mRNA upstream 79223 13459621 ~ 13498404 (-) False tmc6b
XM_036947991.1 mRNA upstream 79223 13459621 ~ 13501211 (-) False tmc6b
XR_005036674.1 mRNA upstream 79784 13460182 ~ 13460723 (-) True LOC118940038
TU1627370 other downstream 38596 13306674 ~ 13339579 (-) True LOC110485496
TU1627367 other downstream 77757 13298691 ~ 13300418 (-) True LOC110485492
TU1627369 other downstream 79982 13296936 ~ 13298193 (-) False LOC110485492
TU1627444 other downstream 92672 13281814 ~ 13285503 (-) False LOC110485494
TU1627585 other upstream 200542 13580940 ~ 13581565 (-) True G1422007
TU1627536 other upstream 252810 13633208 ~ 13635001 (-) True LOC110485508
TU1627681 other upstream 391741 13772139 ~ 13781040 (-) True LOC118940035
TU1627736 other upstream 476478 13856876 ~ 13858250 (-) False G1422125
TU1627739 other upstream 476478 13856876 ~ 13858250 (-) False G1422125

Expression Profile