RNA id: XM_021569280.2


Basic Information

Item Value
RNA id XM_021569280.2
length 2084
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110494322
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62807657 ~ 62812224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacagggacagacagagacatagagagaaaacaaaacaaaacagcatTAGAAAACATGGACCCTCTCCATGTGAATCAACATTCCAGCCCTGTCCTGCCTGTTGAGCAATGAGGCCAactcagagaaagagaaagggggaggggagagaaagcgGGTAAGTGAGAAGGAGGGGTGAAGGGTGTCATTGGTGAGGGGCGAAAACCCCAttggagaagaagagaacagcTAGGGTTTCATTTGGGCAAAAGCTGTGTTACATAATGAAGTAACCTGGCTCAGAGTATCACATACTACGGATGTTTGAGCTTCCTGTGTACAGCATTATTGGAGTAGAACTCACAGGTAAAATGATGCACCCCAAGATGAGGGGTCTGTTTCTTATCCAACTGCTGCTGATTGAACAGGCTCTGTGTAGAACACCAACTCCCCCTGTTCTGAAGACCACTCCGCTCTCCAAGACCTCCGTTTTAGGGGAGGGGGAGACTATCAAAAAGGAGCGGCAGTCACTTCTGGGGTCCCAGACCCAACTTGGTCTCCCATCAGATGCAGCTGAGAGTGCGGCCCCTGAAGAGTGGGTGGTGCAGGATGAGGCCAGGGCCCAGTCTGCCCAGCGTATTGTCACCACGCTGAAGGCCAAGCTGCAGGGCCGGATCCTCGTCCAGGCCAACACCAGCTGTGAGGAGCTGCTGTCTGCCTCTACACTGCAGGACCCTGCCTCAGCCCTGTTCCCCCGGGAGCTCCTGGGCCTATCCCTGGTGCCAGTGCTGGTGGCGGCAGGCTGTTCTCAGGAGGCCCAGACCCTGATACTCAGAATGTACAACCTGTTGGGGGTGGAGGACACAGAGGAGCTCCTCATAGAGGTGGAGAGCCTTATGGCAAAGAGGGCATCCCGCCCCAGAGCCACTACCCCCCCTGCCTCACACATGGAGAAGGTTCAGGCAGAGCGCCACCTACAGGCAGTGATGTTCAACATACAGCAGCTGGCCAGGGCTGGGGTGGGTCAGAGGGGGCACAGGGCCTCTGGAAGAGGGAAGCAGGAGGAGAGGTGTCAGGGCTGGACCAGGGTGAACGGGACCCTGCTTTTGGGGGAGACAGTGCAGGGAGCCACCACAGGGGGGCTGGAGGCGGCTGTAAGTGTCTGTGAGAGCCTGGGGTCCCAGTGTGCTGGTGTGTCCCATAACGGAGGGCAGTACCAGGCGGTTCTGATGTCAGGCAGCCGGGTGGTGCCCTCTGAGTACTTGGACTCAGAATGCTGGATTCGACAGTGCCAGGTGCAGGATGAGGAGTCACCTGGGGCCTCAGGGCGGCGGGCGCGGCGCAGCCCTCAGCGGAACTGCATCAACAAAAAGGAGGAGCACGTGTACAATGTGGTGGAGTGGATCCCTGTCGTCAGCACCCTTTACAACCTGGGCACGGCCGTCTACTACACCTCTGTCAACTGCTCCGAGACGGCCAAGGAGAGAGCCATCCTCAGCGCCGTCGACCTGGGCACTGACGCCCTCATGGCTGTCACTGGGGGAACGGTGGGCGTGGCAGGCTACGTGGCCGGGGCTGGAGTGAAGACGGGGGTGAAGGCTGGGATCAAGTACCTGCTGTCCTCCATGAAGCAGGAGGAGGACCTGATAGTTAATGAGTACAGTTGGGAGGAGGGAATCATCACCATACAGTAAACAGACAGTAGCCTGGTTGGTTGGTAGCCAGATATTATTTTGCTTAGCCAATGGCAGCATAAAAAGATCTGGAGACCAGGAAGTGGTCTCAGGGAACCACTGAGTAAACTCTAAGACCCCTTGACCTCTACTCCCCAATCCTCTCAACCCAAACCCTTTCTGTCCTCCTTCGGTACTATTGGTCAGGTCAGACTCAATTTACACATCTGATACTTCCAGTGCAGGGACTATTGTAACAGTACTACCTTTCagatgttgttttgtttgttctgtGTCCTCTAGAAACATATGGATCGAAATTCAAGCTGGCTATTTGTAAAAATATCAACTAATTGATTTATAAGCTATTTTTCCTTGATACATGAAAGTTTGCAACTGCCCTTGATTGATTAAATTATCATTTTAGCTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685668 lncRNA upstream 2641 62804794 ~ 62805016 (+) True G1473945
TU1685660 lncRNA upstream 16249 62791192 ~ 62791408 (+) True G1473937
TU1685658 lncRNA upstream 23731 62783598 ~ 62783926 (+) True G1473935
TU1685657 lncRNA upstream 24610 62782842 ~ 62783047 (+) True G1473934
TU1685656 lncRNA upstream 25797 62781555 ~ 62781860 (+) True G1473933
TU1685670 lncRNA downstream 2358 62814582 ~ 62814908 (+) True G1473947
TU1685671 lncRNA downstream 2777 62815001 ~ 62815288 (+) True G1473948
TU1685673 lncRNA downstream 8791 62821015 ~ 62821230 (+) True G1473950
TU1685676 lncRNA downstream 10332 62822556 ~ 62822770 (+) True G1473953
TU1685631 lncRNA downstream 14561 62826785 ~ 62827217 (+) True G1473911
XM_036950406.1 mRNA upstream 33216 62763482 ~ 62774441 (+) False c1galt1b
XM_021569277.2 mRNA upstream 33216 62763485 ~ 62774441 (+) False c1galt1b
XM_021569279.2 mRNA upstream 33216 62763485 ~ 62774441 (+) False c1galt1b
XM_036950404.1 mRNA upstream 33216 62763485 ~ 62774441 (+) False c1galt1b
XM_036950402.1 mRNA upstream 33216 62763875 ~ 62774441 (+) False c1galt1b
XM_036950408.1 mRNA downstream 14344 62826568 ~ 62838789 (+) False stat2
XM_021569284.2 mRNA downstream 15329 62827553 ~ 62839920 (+) False stat2
XM_021569283.2 mRNA downstream 15330 62827554 ~ 62839920 (+) False stat2
XM_036950409.1 mRNA downstream 15330 62827554 ~ 62839920 (+) False stat2
XM_021569282.2 mRNA downstream 15331 62827555 ~ 62838789 (+) False stat2
TU1684816 other upstream 96521 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 108842 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1250619 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1808594 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2703650 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 404724 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 846220 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 871866 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1751150 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1796030 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile