RNA id: XM_021569284.2


Basic Information

Item Value
RNA id XM_021569284.2
length 3935
RNA type mRNA
GC content 0.47
exon number 23
gene id stat2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62826568 ~ 62839920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAAATAAAACGGCTAtaagaaacaaaatggtgcattGCGGGGTTGGTCAAAGAGAAATTGGGAGGGGACATTTAGCGAACAAAGTGCGTGATCTTTTAATGAAATCGGGGGGAGGTGAACAGTTTGTTTCAAATGTCTGCTCCCATGAATAGGAAGCGAAGTTTGTCCCTGTTTATCGTTTTATGAGCTACACAATTACCAACAAATAATTTCTGTTAACGTACCAGCTGTCAATCCTACAACATTGCGAATAGCGCGTCGTCGATAATCAGAAACATTTACTGCAGTAACGTAACAGCCAGGCATGGCACAGTGGGAGAAGCTGAGGCAGCTGGAGTCTGTGTACCTGACACAGGTGGATGAGCTGTATGATGGGGATGCCTTCCCCATGGATGTACGCCACTACCTGGCACACTGGATAGAGGGTCAAGACTGGGATCGTGCAGCACGGGACCATGATGTTGCCATGTTGCTGTTCCAGGTGTTATTAGAGAACCTGGATATCCAGCACAGCCGCTTCGTCCAGGGGGGAGAGTCCTTCTTGCTGCAGCACAACATACGCCGTTTCAAACAAAGCTTCCAGAGGTACCAAGAGGAGCCTTATAATCTGGCCAACATCATCCAGTGGTTTCTGGCGAAAGAGAAGGAGATCCTGCAGAACGCTGAGCTGGCTGAGCAGGTCCAGCTGCTGCAGGTCCAGCAGAACCCcatggagacagacagccagcGGAACATTGAGCGCAAGATGACAGACCTTAAGAATAAAGTTCAGTGCATGGAACACACAGTGAaatgtctggaggaacaacaagATGAGTTTGATTTTAAATACCAGACTCATAACATGGAAGGCACCACCAACGAGGCAGAGAAGACGGAACAGATGAAGGTGCTGCAGGCTCTACTCAACAGACTGGACGCCTCCAGGAAGAGCATGTTGTCCGGTATGGGTGTGCTGCTGGACGGTGTAGAGGAGCTGCTGTGTGTGCTTGTGAGGGAAGAGCTAGTGCAGTGGCAAAGGAGGCAGCAGAAGGCCTGCATTGGAGCCCCAGACAGCACCTGCCTGGACCAGCTGGAGAAGTGGTTTACAACGGAGGCGGAGTGTCTGTTCCAGGTGCGTAAGTTCCTTAAGAAGCTGGAGGAGCTGATGGGGAAGGTGACCTATGAGCACGACCCTGTGAAGAAGCAGAAACCAGCGCTGCAGAAGAGGGTGGACAGCCTCCTCACCAGCCTGCTCAAAAGCGCCTTTGTGGTGGAGACTCAGCCCTCTATGCCCCAAGGGAAAGGCCCCTTGGTCCTGCGTACCAATGTCCAGTTCTCAGTCAAGACCAGATTCCTCGTCAAATTTCCTGAGCTGAACCATGCCATGAAAGTGAACGTGTCTATGGACAGGGAGGCTCCTTTGGTCAAAGGGTACCGTCGGTTCAATGTCCTGGGGACTAACAGTAAGGCCCTGAACATGGCTGAGAGTATGAGTGGAGGCATGGTGGCAGACTTCAGACATCTGACACTGAAGGAGCAGAAATCTGGAGGAGGGGGCAAGGGGATCCATGACCTCTCTCTCAGCGTCACAGAGGAGCTGCACATCATCAACTTTAACACCGAGTTCCTTCTGCACGACATGTCAGTCTCCTTAGAGACGTCCTCTCTCCCTGTGGTCATCATCTCCAACTCCAGCCAGCAGCAGAGTGCCTGGGCTTCCATCCTCTGGTTCAATATGCTCTGCCTCGAGCCAAAGAACCTTCTGTTCTTTGCCAACTGTCCCGTGGCTACGTGGCCCCAACTAGGGGAGATGTTGAGCTGGCAGTTCCTCTCTTCCACCACGCGGGGTCTGGACTCTAACCAGCTGGACATGATCGCACACAAACTCTTTGGAAAGCAGCAAAGTTACGATGCCTGCAACATCTCATGGACTAAGTTTAGCAAGGAAAATGTTCCTAACACCAACTTCACTTTTTGGGTGTGGTTCGATGGTATACTTTTTATGGTGAAGAGTCACTTGGAGAACCTGTGGAAAGATGGTTCTATCATGGGTTTTGTGAGTAAAGGCAAAGAGAAGACCCTCCTGAAGAAGAAACAGAGGGGTACATTCCTCCTGCGCTTCAGTGAGAGCATCAGAGATGGAGGCATCACCTTCTCCTGGGTGGACTACTCCCCAACCGGTGAGCCTGATGTGCGCTCGGTGCAGCCCTTCACCAAAGTGGACCTTGGCCAGATCCCCTTTCATGAGATCATCAGAAACTTCCAGATCCTGGAGGAGGAGAACGTCCCGGAAAACCcgctcctcttcctctaccctgaCACGCCCAAAGTGGAGGCCTTCGGGAAGTACTACACAAAGAAGAGTGGAGCGGATAGTGAATACATTAAGTACATCAGAACTAAGTTGGTTTTCGTATCTAAAGAAGCCCTCCACCTTCCCTCCCTTGGGCCTAATTGGGGACCATCTTCCCCCAGAGCTGCCCCTGAGTCCTGACCCCATGTTCTCTGCCATGGTAGATCCCGATGAGGACCTGAATCCCACCCTCCAGGAGTTCCTCAATGACCCCAACATGTATCATTGCGTTGACTTGCTTTCTGACGACACAACCTTCCTTGAGGGGGCTCTACCCGGACACCCCTTCACTGCCCTTCTGCAGCCCTGTGAATGACCACACTCACACCAATACAATGTCTAACCAAACTATATGACTTGCTACTGTGGAAGCACTTACCCACAACTCAAAGACAACAGCCATCCATATTTAACCAAACTCTGAGGATGCACATTAGACCATAACTTGGTTACATTGTTAATTCTATAGTCTACAAATATAGGCTACTTTCACCCTGCATCTGTAACATTAGAAATGCTGCATGGACCATCTGTGCCCATCAGGTATAGCATAATACAATTTTTCTATGTGaaaatatgtgtgtatatattacaTTGAGAGATCTagcaagatttttttttttgcactgttgTGAAATGACTGATTTCTGACAAGGAAAAAATATGTGAATCCCATTTTTATAATATTTGCAATGCCTTCACACAGCTgtagctttaaaaaaaagaagctcATTTAGTGTTTTGAAAAGGTAATGAAACTTTTGcacttcttcctctcttctctgtttTGTCTTTTAATAATAATCTCAATGTTTTTGTCCAAATACCATATTTGACACTGGATAAAAGGTCTGGTTGAGCAAAAACAACTAAAAACTGAGACATTGCATGTCTGCTTACTAGGTAGAAAAGCCCAAAAGCATTGTATTATACATTGATGTGAGAAAACGTGACTTTATATTACATGGTACATTACTTGTGTCTGACAGAGTTAAGAATTCTATTAGGTGTGAATGATACATTATCAACCAGCATCCAACCCCAGGAAGGTATGGAGGGACACATTTTAAGGCGCTACTCCAAAGAGCTGGAGAAgatgagtgactgagtgagatCCAAGTCTTGGGTCCAGTCGGTTTCATTTTAGGCCATTTCAGACTGTACCACATGAATCATCATTTTTATGGTTTCTGATTGCTTTTAGAGTGTAGCATTTCTGGTGACCACTTACCTTATTTATGATAGCGGGATAAGTCAATCTATATGCTGTGGGTGTACAGTGTTGTCGGGCACAGCATGGGCTGCAGAATGTGATCATTAAAGAGTGACTTGTTATGTACCACTATTTACAGGTCAGGGAATTATCTTGAAGTGAAATAACCACAGAAAGCCTGTTATTTTATACAAGCCGCAGCAGGGATATTGCAAACTTTACTGTTCGTTCAGGATTCACAACTCCGGAATACAGCGAGGAAAGATTAACATGTATTGGGAATGGCATCTATCATTTGTATTTCTTGTTTTACAGAATAGTCTGCAGATAATGACATATCTGTGATGATAAATGGGTTAAAATAAACTGACTATACAACCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685631 lncRNA upstream 336 62826785 ~ 62827217 (+) True G1473911
TU1685676 lncRNA upstream 4783 62822556 ~ 62822770 (+) True G1473953
TU1685673 lncRNA upstream 6323 62821015 ~ 62821230 (+) True G1473950
TU1685671 lncRNA upstream 12265 62815001 ~ 62815288 (+) True G1473948
TU1685670 lncRNA upstream 12645 62814582 ~ 62814908 (+) True G1473947
TU1685680 lncRNA downstream 20242 62860162 ~ 62860455 (+) True G1473957
TU1685683 lncRNA downstream 27907 62867827 ~ 62868255 (+) True G1473960
TU1685690 lncRNA downstream 42103 62882023 ~ 62882250 (+) True G1473967
TU1685704 lncRNA downstream 57236 62897156 ~ 62897547 (+) True G1473981
TU1685708 lncRNA downstream 64972 62904892 ~ 62905356 (+) True G1473985
XM_021569280.2 mRNA upstream 15329 62807657 ~ 62812224 (+) True LOC110494322
XM_036950404.1 mRNA upstream 53112 62763485 ~ 62774441 (+) False c1galt1b
XM_021569288.2 mRNA downstream 116804 62956724 ~ 62958969 (+) True tsfm
XM_021569289.2 mRNA downstream 120169 62960089 ~ 62968544 (+) False myl6
XM_021569290.2 mRNA downstream 120169 62960089 ~ 62968544 (+) True myl6
XM_021569297.2 mRNA downstream 264675 63104595 ~ 63121550 (+) True pfkmb
XM_021569298.2 mRNA downstream 284968 63124888 ~ 63141041 (+) True itgb7
TU1684816 other upstream 116417 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 128738 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1270515 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1828490 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2723546 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 377028 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 818524 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 844170 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1723454 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1768334 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile