RNA id: TCONS_00004469


Basic Information

Item Value
RNA id TCONS_00004469
length 4888
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_002355
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39476432 ~ 39841419 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCACGCAAACTCTCTCTATAAACAGAGAATTTTGAATTGGTTAAGTCATATAGTGTGTAGCTGACTTGTATCAGACTCTTTGTGAAAGCAGCGGGGAGGAGGAGACGGAGGAAGGAGGAGCGAAGCCGTTCAGCACTGCCTCATCCGCGgctgagagagtgagagagagagcatggAGCGGACTGCGTGTGAGCCGGACTCTGATACGCTTTGAGCGGCAGACCGAGAGAACGCGCGCCGGGTTCGAGACTCGGAGCTCCAGAAACAGCGTGTATAAGCTGCATTTAACAGCATTATCAGTCCAAACCAGAAGAAAAAGAGAATTTTAAAAGCAGGAAAGATTCTCAGCAAAGAGCAGATCGATTATTTGGAAGAAATCAGCGCTCCTAACTTTGGAGGACCGCAGTAAGCGCACATCACCGCCTCAGTAAAGCATCACATTTTCTGAAGAGATCCACACAAGGACTCCAGTGATGTGCTCCGGgatgctgctgctgttgctgatCTCCGGGCTGCTTGGGTTCGgaggctGTGTTATGTTCATCCAGCAGCCCCATGATCTGGTGATCGTGGCCGGGGAGCCGGTGACTCTGCCGTGCACCATCATCGGGTATCAAGGCATGGTGCTGTGGGTCAAAGACGGACTCGCTCTGGGCGTCAATCGAGATCTTTCTGGCTATCCACGCTATGATGTGATCGGGGACCACAGTAAAGGAGAATATCATCTGCTCATCGAGCGGACTGAACTGGTGGATGACGGAAGCTTTGAGTGTCAAGCCATCCAGGTTGCTGGCAGATCTCGACCCGCTCAACTCACTGTGCTAGTTCCTCCTGATGACCCTGTGATAATCGGAGCACCTGTGGTGAGTTTGAGGGCTGGAGACTCGCTAAACCTCACGTGCCACGCCAACAACGCCAAACCAGCCGCCTCCATCATCTGGATCCGCAATGGAGAGGTGATTAACGGTGCGGCGTACACCAAGACGTTGTTGCGAGATGGTAAAAGAGAAAGCACGGTGAGCACGCTCCACATCTCAGCCTCGAACATCGAGAGCGGTCAGCAGATCACCTGCCGGGCCTCCAACAAAGCAGCGCCCAACGGCAAAGAGGCCACGGTCACCATCGACATCCAGCATTTCCCACTGGTGAATCTCTCTGTGGAGCCGCAGCCTGTTCTGGAAGGCAATCTGGTCAAGTTTCACTGTGCCGCTAAAGCCAATCCCCCTGTCACTCATTACAGATGGGCGAAGGGTGGAAGCATGATCACAGACGCAACGGGAGACACTTATGAGGTGCTGGTTGATCATTCCTTCTTCACCGAGCCTGTGTCCTGCGAGGTCACCAATGCCTTGGGCAGCACCAACATCAGCAGAAACGTGGATGTGTACTTCGGGCCACGTCTGGCCGCAGAACCCCAGAGTCTGCAGGTGGACCGTGGTTCTGATGCTGTGTTCAGCTGCGCTTGGATTGGAAACCCTTCACTCACCATCGTCTGGATGAAGAGGGGCCATGGAGTTGTGCTAAGCAATGAGAACACCTTGACGCTGAAGGCGGTGAGACAGGAGGATGCTGGGAAATACGTCTGCCGGGCTGTGGTTCCACGGGTGGGAGTCGGAGAGAAGGAGGTCATGCTTACTGTCAACGGTCCTCCTAGCATCTCCAGCACACAGACACAGCAGGCTCTGTACGGGGAGAAAGGCCAGATCAAGTGCTTCATCCGCAGCACTCCTCCTCCTGACCGCATCGCATGGTCATGGAAGGAAACAGTGCTAGAATCAGGAACATCAGGCCGTTATACAGTAGAAACCGTGAGCACCGAGGAAGGAGTCATTTCCACCCTCACCATGAGGAACATCGTCCCTACAGACTTCCAGACCATCTACAACTGCACCGCATGGAACAGCTTCGGCTCCGACACCGAGATCATTCGCCTCAAAGAGCAAGGGTCTCTGCGATTGGCCGTCATCATCGGGGTTGCAGTGGGAGCTTTCCTGGCTCTGATCGTCCTCATCGGGACCCTGGGGGCTTTCTGCTGCGCTCGTCTGCAGAGGAAGGACATGCACCTGGTGATGTCTTCACTCCCAGTGTCCCTCTCTTCTAGACAGAGAGAGATATCCGGCACAGTAAAAAGCGAAAATCTCAAAGGAGTCGTGTCCGCTAAAAATGACATCCGAGTGGAGATTGTACATAAGGATCATAACGCAGCCAGAGAGCCGGAAGAGCACAGCAACGTGAAGCAAATGATGATGGAGCGAGCCGACTTTCAGCAAGAATCGGTGTTGAAACAGTTGGAGGTCCTGCAGGAGGAGGAGAGGGAGCTACAACACATTAAGGATCCAACCAACGGCTATTACAGCGTGAACACCTTTAAAGAACAGCCAACCCCGACCATTTCTctcacagccaatcagaacgctGAGGTGCGAAACCCTGCCACGGCGACCCTCGGAAAGCATCGTGTCCCCACCGGCATGTCCTACACCAACATCTACAACACACTGGGCGCCGGACCCAACCGCCTTTACGACTACAGCCAGCGATTCGTGCTGGGCATGGGCAGCAGCTCCATCGAGCTCTGCGAACGCGAGTTCCAGCGAGGATCCCTGAGCGACTCCAGCTCCTTCCAGGACACGCAGTGCGACAGCAGCGTCAGCAGCTACAGCAAGCAGGACGGATACGTGCAGTTCGACAAAGCCAGCAAAGCCTCAGTGTCGTCTTCATCCCACTACTCGCAGTCCTCGTCTCAAAACTCAGACCTGACCCGACCACTGCAGAAACGGATGCAGACGCACGTTTAACAAGGTGTGCTTATAAACAAACACTGAAGCCCGCCCCTGAATGTCTGGCATAAATGTTTACATGGCTTAATTGATGCAGGAAGTGCCTCCCGTCGACGGATGAGCCTGCAGAACATTGAAACGTAACTCGAGCTGTGCATCAGAGCAATTACACTGAtcaaataatcatgattacaaaATAAGTGTTGAATAAAACAGTGTGTGGGAAAGACGttctgtggtcattaaagctGAGGTGgcctcttttttctttttagatgAAGTCCTGTCAAATCGGATCGTATCAACAGCGGGTCACTTTGAAGGTATTAAATATGCATGAAGTGAGATGAAGGGGTTATGAAAGTTTTAACTAATGTCTCATTTAAAGGGAACATTTTCTCGTAGTTCTTTGAACAGAATGATCACAGATGATAAGGATGTATAGATGAATTactatgtttgtaaacattcagaatGCACGCGCAGGgaagtggcaaaaaaaaaaacccgggagcgctagcatttacagcgagggaatgacatcctacatatatatatatattagggatgggaagattaaccgatatgtatcgatacgcggtcatgcgcgtgcacgatgcgagtgcatcggttgagcagcagaggatgaatgaaattttggaagcaaatcgagatgcattggtttttgcgagatgcatcgatttttccgagatacagcttatatttttaatatagaatgtattttttatttattaacaagtgttgtcaacctgtttttggcgcataatttaatcgacctacataaagtaagccttagcaacggatttgcggatgtgcacacactacaactcagtgtatcaggtgtgcggatgaagctagtggagcgccctcagaaagtgcgagaagcaaaacaaacattttattccccactgagttttaaatctaaagtatggcaagcaacattatggatttaaggatggacgacatgacaggacagatgcaatttgcaaaatgtgccgcgcatctgtaaaatacgcgggcagtatgactaatctgatatctcacttgaagcggcgccacggtgttgttgtgaaagcatcttccagtgtttctgcatccccggctttcgcactgcttcaaccagctccaaaagtggtgagaaaagcattgcaagttttttttccatgcgcaacagttctgctcgctctacgccaataacgaatgctattgcattgttcatctgcaaagatattcagcctagtgtcacggagaacgaaggttttaaacacctcctcctgttaatttttatttaattataataataataatattaataataataatgataaaaataattgggtgtcacggtggcacagtgggtagtttgaccacctcacagcaagaagattgctggtttgttatatttttattagcctgttgtttacagtgacagtgacgtttcaaagcagcataacactgctagttcacaaccttaagtttcgaataatcagtggcaaaatatatctttgtaaaacttgttttcatagttgaaaagttaaatcacaattcttgttgtgcaatgctaaaactttatgttgaaagagtgcaaatatatatatatttttttaatatatattgcacttatacattctgtttatcttgaaaatacttaaataatatgtgctatatgttctaaaatggccctctactgtaaactgacactctggctctgagagaagagccagtttgtaaaaaaaagtcttggttttgcttggtttataaataatcaaactcattcaatggcacagcatcctctttcacatcatctcataaacttgatctaattagttagtgctgaaatatcgcatcgtatcgtgatatgggtgtgaatcgtatcgtgttgcatcgcaatatgtcacaaatgtatcactaatatatcggatcgtattctttgtatcgagatgcgtatcggatcggcattatagcttagatgcccaaccctaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttatatatatatatgagcaatatcacactcg

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007416 synapse assembly biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-44 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion and synapse assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell-cell junction. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 4. Orthologous to human KIRREL3 (kirre like nephrin family adhesion molecule 3).

Ensembl:

ensembl_id ENSDART00000190375

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005730 lncRNA upstream 82616 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00004466 lncRNA upstream 190815 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00004454 lncRNA upstream 388579 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00004449 lncRNA upstream 715988 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005934 lncRNA downstream 67719 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005935 lncRNA downstream 280955 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00005936 lncRNA downstream 281180 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005937 lncRNA downstream 432839 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005732 lncRNA downstream 694443 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00004467 mRNA upstream 168613 39304422 ~ 39307819 (+) True XLOC_002353
TCONS_00004465 mRNA upstream 181707 39283985 ~ 39294725 (+) False XLOC_002352
TCONS_00004462 mRNA upstream 203401 39248911 ~ 39273031 (+) False XLOC_002351
TCONS_00004464 mRNA upstream 208988 39263827 ~ 39267444 (+) True XLOC_002351
TCONS_00004463 mRNA upstream 208994 39249035 ~ 39267438 (+) False XLOC_002351
TCONS_00004474 mRNA downstream 52020 39893439 ~ 39905253 (+) True XLOC_002358
TCONS_00004475 mRNA downstream 111576 39952995 ~ 40113996 (+) True XLOC_002360
TCONS_00004476 mRNA downstream 319083 40160502 ~ 40274459 (+) False XLOC_002361
TCONS_00004477 mRNA downstream 362756 40204175 ~ 40274459 (+) False XLOC_002361
TCONS_00004478 mRNA downstream 373458 40214877 ~ 40274459 (+) False XLOC_002361
TCONS_00004447 other upstream 792652 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 928227 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 987603 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004421 other upstream 2328648 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 2515742 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004486 other downstream 709311 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 713498 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 758516 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004495 other downstream 766282 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004496 other downstream 768042 40609461 ~ 40609953 (+) True XLOC_002376

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00506323_00574369.mRNA True 2262 mRNA 0.56 15 CI01000197 506323 ~ 574369 (+)