RNA id: TCONS_00004476


Basic Information

Item Value
RNA id TCONS_00004476
length 2858
RNA type mRNA
GC content 0.52
exon number 21
gene id XLOC_002361
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40122374 ~ 40281002 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCCTTTCAGTTTCTCATTCATTCCGGTCATTTAAAACTTAACGACTGCATCTTACAAAACGATGGCTACTTAATATGTAAATAAAGGGAGCTCTCCTGTTTTTGGGAGGAAATCTTCTATAAAACCAAGCATGTCAGCACTGAGCCATCTCACAGGAAGTGCTGAAGTCAGCTCAGGCCAGGTGTGGACTCACTGATCTGTATTTGGACTCATGTGAAACCGGGCAGAAGCGGAACCATGTCCGAGACCCTCCAGCTGCCCGCACTGCAGATCCAGGGTCCGGAGTGCAATGGCTCCGAGGTGGATCCAAACCTCTCCAGCTCCTCCAGCCCGGCTCTGCGGCGCAAGCGCTTTAAAATGCGCAGGATGAAGAACGTGATGAGCGAAAAGGAGCAACTGGAGAAGGAGCAGCTTCAGCGTTCAGGCTCCAAGGAGTACCTGCAGCTTCCATCCATTGAGATCACGCCATCCAGCGACGAGGACGCGGCCTGGTCCAGCTGCTCCACACCCAGCGCTTCACCTCAGCGCAGACGCTTCCTCCTGCGCAAGTGGTTGAGGGGAGGAGAGAAGAAAGAGCACGGCAGTGAGAGCAGCAGCCAGCAGAGCAGCCTGCAGAGCAGCCATGAGGAAGAGTCCACACGCTACCTGAGCCCCAACACACGTGAGGACAgCACTGCCAGTAACTCGAACCGCAGCACGCCGGCCTGCTCACCCGTCCTGCGTAAACGCTCACGCTCCCCAACGCCCCAGAGTCCCGAGGGAGAGAACATGGTGGAGAAGGGCTCGGATCACTCCTCAGATAAATCCCCCTCCACCCCAGAGCCAGCCGTCCAGCGCACATACAGCCAGTCGCTTCACACCACCCGCACCGGAGGGAAAAACTCCAAGAAAAGTCAGAGCTGGTATAACgtttTGAGCCCCACATACAAGCAGCGGAATGAAGACTTCAGGAAACTCTTTAAGCAGCTGCCCGACACAGAGCGCCTCATTGTGGACTACTCCTGTGCCCTGCAGAGAGATATCCTCCTGCAGGGTCGCCTCTACCTCTCTGAAaactggatctgtttttatagCAACATATTCCGCTGGGAAACGCTGCTGACGGTGAGGTTAAAAGATGTTTGCTCCATGACGAAGGAGAAGACGGCTAGACTTATTCCCAATGCAATCCAGCTGTGCACGGACAATGAAAAGCACTTTTTTACCTCATTCGGAGCGAGAGATCGGACGTACATGATGATGTTCAGGCTCTGGCAAAATGCTCTGCTGGACAAGcCATTATGTCCCAAAGAGCTTTGGCATTTTGTCCATCAGTGTTATGGGAATGAGCTGGGTCTGACCAGTGACGATGAGGATTATGTACCTCCTGATGACGACTTCAACACCATGGGGTACTGTGAGGAGATTCCTGCTGAAGACAACGAGGCCAATGACAACTGCAATAAAACCCCAGACGCCAAGATGGACATCAGTCCCCAGCTCCATCGGAAGGTGTTTCCCAACAGCAGCCTGAACTCCACAGACAGCACTGATGCTCCGCTCAATTTTGATGTGCCCCCGGTGGAGGACTTTACCAACTGCATCCCAGAAGACCTCCTGCCCCTGACCTTACCTGATAATAAGCTGTCAGAGACCGGTGGCTCCGCCCATGTCCCCGCCCCCTCACCCTCGCTTGATTTTAATGATAATGAGGATCTTCCCACTGAACTCAGCGACTCCTCAGAAACACACGATGAGGCAGGGGAAGTTCAGGCCTTCCAGGAAGATCTGAATGGGAAACTGTACATTAATGAAGTGTATAAGTTCAGTGTGGATAAACTGCACGACATCCTGTTCACTGAATCACAGTTCATGAGGGAGTTTCTGGAGCAGAGACGCTTCTCagATGTGGTCTATCACCCATGGAGGAAAGAGGACACCGGTAATCAGACCAGAGAGATCATGTACACCATCTCCCTCTCCAACCCACTGGCCCCAAAGACGGCCACAGTGACAGAGACGCAGactttgCACAAGGCCAGTCAAGTGAGCGAGTGCTACATCATTGACGCTGAGGTCATTGCTCACGATGTCCCCTATCATGACTATTTTTACACACTCAACCGCTACATGCTCACTAGAGTCGCAAGGAACAAGTGCCGCCTGAGAGTGTCAGCTGAACTGCGCTACAGGAAGCAGCCATGGGGATTAGTCAAGGGCTTCATTGAGAGAAACTTCTGGAGTGGTCTGGATGAATATTTTAGGTATTTAGAGCTGGAGCTGAATAAGGTACAGCTGGTGCTATCTGAACAATCTCCCAAATCCAAAGCATTACGCACAGCTACAGTGAGGCGGAGGAAGCGGCCCCTGACGCACATGAGGCCGCAGCACATGGACGAGGCCCTCAGCCCAGTCACCACACCTGAGGATGAGAAGAGCGTCATCCAGCGCATCAAACATGTGGCAGGATCCACACAGACCAGACACATGCCAGACCACGCGTCTGAAGGCCTGGCTCTCTACAGCGTTTCCAAACTCCTGCTCATCATCAGCTCTGTTCTGGTGCTGCTGGTCTTTTTGAACTTGATGCTGTTTTATAAGTTATGGATGCTGGAATACACGGCTCAGAGTTTGGCCTCCTGGCAGGGTCTCAGGTCTCATGAAAGTAAACTTCCACAAACACAGATTGAATGGGCTCAGCTTTTGGAATCTCAGCAGCGTTACCATGAAAGCGAGCTGGAAAAATGGAGGGAAATAATCAAGTCATCTGTGCTGTTATTAGATGAGATGAGGGAGTCTCTAATGAAGCTGCAGAAAGGTATCGGGTTGAGAGACTATGATTCAGACAGTGAAGAAAGAAGAAGTCACTATCACTGA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0099643 signal release from synapse biological_process
GO:0042982 amyloid precursor protein metabolic process biological_process
GO:0042983 amyloid precursor protein biosynthetic process biological_process
GO:0042984 regulation of amyloid precursor protein biosynthetic process biological_process
GO:0006906 vesicle fusion biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0065008 regulation of biological quality biological_process
GO:0051179 localization biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0032940 secretion by cell biological_process
GO:0046903 secretion biological_process
GO:0051234 establishment of localization biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0055067 monovalent inorganic cation homeostasis biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030004 cellular monovalent inorganic cation homeostasis biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:1903018 regulation of glycoprotein metabolic process biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0010559 regulation of glycoprotein biosynthetic process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0042734 presynaptic membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0015399 primary active transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-091118-87 Predicted to act upstream of or within lipid transport. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of membrane. Orthologous to human GRAMD1B (GRAM domain containing 1B).

Ensembl:

ensembl_id ENSDART00000171879

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005936 lncRNA upstream 26097 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005934 lncRNA upstream 242994 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005731 lncRNA upstream 379653 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005730 lncRNA upstream 766686 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00004466 lncRNA upstream 874885 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00005732 lncRNA downstream 261403 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005733 lncRNA downstream 355371 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00004529 lncRNA downstream 665205 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00004545 lncRNA downstream 1676741 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00005938 lncRNA downstream 1708538 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004475 mRNA upstream 46506 39952995 ~ 40113996 (+) True XLOC_002360
TCONS_00004474 mRNA upstream 255249 39893439 ~ 39905253 (+) True XLOC_002358
TCONS_00004469 mRNA upstream 319083 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004481 mRNA downstream 9544 40284003 ~ 40317474 (+) False XLOC_002362
TCONS_00004480 mRNA downstream 9544 40284003 ~ 40317474 (+) False XLOC_002362
TCONS_00004482 mRNA downstream 9544 40284003 ~ 40317479 (+) True XLOC_002362
TCONS_00004483 mRNA downstream 46608 40321067 ~ 40328823 (+) False XLOC_002363
TCONS_00004484 mRNA downstream 49936 40324395 ~ 40328989 (+) True XLOC_002363
TCONS_00004473 other upstream 399623 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004472 other upstream 461015 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004447 other upstream 1476722 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 1612297 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 1671673 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004486 other downstream 276271 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 280458 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 325476 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004495 other downstream 333242 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004496 other downstream 335002 40609461 ~ 40609953 (+) True XLOC_002376

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000197_00734975_00782217.mRNA False 2607 mRNA 0.52 19 CI01000197 734975 ~ 782217 (+)