RNA id: TCONS_00004480


Basic Information

Item Value
RNA id TCONS_00004480
length 5480
RNA type mRNA
GC content 0.44
exon number 22
gene id XLOC_002362
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40284003 ~ 40317479 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAACACGTCCTCCCAACATCTGTATCTCTCGCTCATTAATGCGTTAATCACATTAATGTTTTTGATGATCGTTTAACGCAGCTGCACGATGTCCATCAGAGCGCGTAACCGAGAGATCTGCGCAGACTGCAGCGCGCCCGATTCCCGCTGGGCCTCGATCAACCGCGGTGTTCTGATCTGTGATGAATGCTGCAGTATTCACCGAGGTCTGGGTCGACACAGCTCTCAGGTCCGACATTTGACCCAAACCTCCTGGCCGTCCTCTCAGCTACAGATGGTGAAGTCTCTGTACAATAATGGAGCAAATTCAATCTGGGAACACAGTCTCTTGGATCCGTCTTCCATCATGAGTGGAAAACGCAAAGCCAATCCTCAGGACAGAGTGCACCCCAACAAAACAGATTTCATCAAGGCTAAATATCAAATGTTGGCGTTTGTTCATCGCATGCCGTGTCGAGAAGACGACAGCGTCACTGCCAAAGACCTCAGCAAGCAACTTCACTCTAGTGTGAGAACTGGCAATTTGGAAACGTGTCTAAGGCTGTTGTCGTTGGGAGCTCAGGCCAACTTTTTCCATCCAGAGAAAGGAAACACTCCTCTACATGTGGCAGCTAAAGCGGGCCAGCTACTCCAGGCCGAGCTGCTCACTGTGTATGGAGCAGATCCCGGAGCACCGGACAGCTCTGGAAAGACTCCTATTGACTACGCCAGGCAAGCCGGGCACCAGGACCTCGCAGACAGACTGGTGGAGATCCAGTTTGAGCTGACAGACAGACTAGCGTTCTACCTGTGTGGAAGAAAGCCAGATCATAAAAATGGTCAGCACTTCATAATTCCTCAAATCGCAGACAGCGGTCTTGACTTGTCAGAACTGGCCAAAGCAGCAAAGAAGAAGCTTCAGTCTCTCAGCAATCATCAGTTTGAAGAGCTAGCCATGGACGTTTACGATGAAGTTGACCGAAGAGAAACAGATGCAGTTTGGCTTGCAACACAGAACCACAGTACTTTGGTAACTGACACCACGGTGGTTCCTTTCCTCCCTGTCAACCCTGAATATTCTTCCACTAGGAATCAGGGACGTCAGAAGCTGGCCAGGTTTAATGCACATGAGTTTGCGACGTTGGTTATTGACATATTAACTGATGCCAAACGGCGTCAGCTGGGGAATTCTCCTGATAATGTTAAAGATAATGTGGAGTTAATTCTGAAGGACATTGGAAACCGTCGTGGCAGTGAAAGTCCAGAGCTGGACCAGCCTGATTATGACAGTGTGGCATCCGATGAGGATACAGAGCAAGAACCAACATCGGGAAAAGATGAGCGAACCAAGAGCTCTGAGTCTTCAGACTTGTCAGACAGTCCCATCACCGTGCAGGAGTTCATGGAGGTCAAAACTGCCCTCAACGCCTCCGAAGCAAAGATCCAGCAGCTCCTCAAGGTCAACTGCCATCTTAGCGAGGAGCTGAGACTCATGCAGAGCAAGTTGAACTCCCTTCAGAATGAGAACAGCAATCTGAAATGGCAAACTCCTAATAGTTTGGTAAGGCCGCAGGACGTCCCACACAGGGCAGCTCCTCGCGGCTGTAGGGCCATGTCCATGTATGAGACTGGATCAGGATTGAGGCAGTACCACCCTAGAGGAGAGACGGTCCACCCTGACACAAACCTGACTCTACAGCCACTGCCATCTAATATTGGGAAGGGTCCCTCGGTGACTGCCTTCTCCTCCCTTCCCACGTTCCCCTCAACTCTGTCCTGGTCCTGGGATGAGATAACCCAAAGGGGATCCAGTTTAGACGGCCAGAGCGGCATGCCTGCAAGTGACTATGATAATACACTGAACCATGCTGAGATGAACGAATCTGGGACAATTCAAAGTAATTTCTCGAGGGCGAGCGGGTGGCTGGGCGACAGTACAGTGCTGTCAGAAAACCATTCTGAGGGTGAGAGCGACTCGACTTTACCATGTACAGAAGACGTAATCAGCAAGACGGAGCTGATCACCAAGAACATCCAGGAATTACTGAGAGCTGCGCAGGAGAATAAACATGCCAGCTTCGTCACGTGTTCAGAGAGAATTCTTCTAGCAGTGACGGAAATGGCTACGTTATTCCCGAAGAGGCCATCTTCAGAGACCGTTCGTGGGTCTTTGCGTCTCTTGACCTCCAGTGCCAGCCGTCTGCAGGGCGAATGTCAGAAGGCCACACCGCACGACTCCCAGCAGGTTATTCAGTGTGCCTACGACATTGCCAAAGCGGCTAAACAGCTAGTTACTGTGACTACCAAAGACAGTAACTGAGTTACAGTATCTGAACGCCTTTCACCATGTCTACACGTTTATTTGCTATTATATTGTCCAGTATTATTTAGGGCTGGGACCATACATTGATGTTTTGTGATTCATGGATCGAGTCTTAGACTATTGGAATGTATCGTAGTTCTCCTGGAATTGattctgcatttagtttttaacaccagatggcgctctatggAGAAGCGTCTGGTGGAGATCCAACCCCACCCACATCCAAGTGTCATGTCAGACGCCACACTGCAGCGTGTAGAAAGATGTCCAATGCTTAGTGGATGCACGTGTGTAAGCGTTTGTTGCTAAttctgttttatatataaaatgacacattttattgtgtgttattaacatctacacctccccataccctaaacccaaccatcacagtaaggGTGCTCATTACATTGTCTGACTTGCCACTTTGATGTAGGAGGAGTTGAATGTCCACCTCAGACTGCAGCGAGCACTACTTGGCTCTGGGCtgggtttttttttaacagcagactgcgctctatgctagtttttaaaagcagatggtgctCCAGGCAAGTTTTTAATGCCAGATGGTgccctaggctagttttaaacagcagatggctctctaagctagttttaacagcttacggcgctctaggctagttttaaacagcttaCAGCaccctaggctagttttaaacagcagatggctctctaagctagttttaacagcttacggcgctctaggctagttttaaacagcttacagcactctaggctagttttaaacagcagacggctctctaagctagttttaacagcttatggtgctctaggctagttttaatagcttattgcgctctaggctagttttaaacagcagatggcgttctaaGCTACTTTTAACAGCttatggcgctctaggctagttttaaacagcttaaggtgctttaggctagttttaacagcagatggcgctctaggctcgTTTTAAAccacagatggcgctctaggctagtttttaaccgcagatggcgctctaggctcattttaaacagcagatggcactctaggctagtttttaaccgcagatgtccctctaggctagtttttaatggcagatggcactctaggctcttttaaacagcagatggccctctaggctagtttttaacagcagatggcactctaggctagtttttaacagcagatggcgctctagggtagtttttaacagcagactgcgctctaggctagtttttaacagcagatggtgctctagactagtttttaacagcagactgcgctctatgctagtttttaacagcagatgttgccctaggctagttttataacagcagatggcgctctatgttagtttttaacagcagatggtgcccctaggctagtttttaacagcaggtgacGCTCTAGccctgtttttaacagcagacagtgctctaggctagtttttaatcatACACTATTAGCAAGCATGAAGAACTCTTGAGCTTTCAGCGATGTAATGTACTTCCACCAcgcatttattgtgtaatttgctTGAATGTTTTCATCAAATCATCAACGTTATTAATGATGGTTATGTTTAAGTGGTATGAGCAAGGACTAGCTGTATGTTGCTGTTTATAAAACATACAGCGCCACCTGGTGGCAAAAACCAAGCTCAATTTCAGAATCGATTCAGAATCAATTCTCATTGCATCAATTTATTGTCCCGCCccaggtattattattattattgatgatcaACACAGCACAGTTTGGTTTGTATTCTTGCAGAAATgaccttttttatatatattttattcgtACACACTAACATAAATTTTGGGACACTGAGTTTCAATTATCAatgacattattaatattattattgttttgtcctAGCTTTATGGTGCCGTTTTTAATTGTAAACTAATATTTGTTTTGCTTCCGATGGTGCTAATGAACTCATTTTCGTCTGTATCGCTCATGTTTGTGGATTAACAGAACAAGGCCTTTACTACCTGTGCATTTCCAATACATCACGCCAAGACAAAACCGGAACAAATCGTAAACAGCTATTATTGCTGAAATTCAGCTGGTGTAATAAATGGTTCTTTGTCTTGAAAAGCAGTTCACTCAAAACGTGACCATGATGTAGATGTCAGGACCCACAATGCCTCATTTCTTGTGCAATAAATACCCTTTAGCCTCGCTGCAGAATAATATCTTACCCGTCCTGGTGTGGCCATTGAATTAAGTATTCAGAGTGTATAGTCTTATTATGAAGTGCTTTAGTATGTGAGCtgttgtgtgtgcgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaatcagtaagatttattttttatgttttaaaaggtaattctgctcatcaaggctgtatttattggatggaaaatagtcaaaattgttaaatataataatataatccaTTAATAACGGTTTTCTTATTGAACATAGTTTCAAGTTTAgtttattcctgtgattcaaagctgaattttcatcattactccagtctatACGTCTGTGTCACGTGAGCCTTCACAAATCAGAATGCTGTTTGCTTGTGATCATTTATTATTGGtacaaaaacactgatttaaaataataataataataataattctaaaataaaataggcgacacagtggctcagtggttagcaatgttatctcacagcaagaaggtcgctggttcaagtcctggctggatcagttgacatGTCTGTGTTCGTAATGCTGTGGGTTTtatccgggtgctcaggtttctcccacagtccaaacgcactacggccaattttatttatccaattcatctatagtgtacgagtgtgtgtgtgtgggtggatactgggttgcagctggaagggcatccgctgtgtaaaacatatgctggataacttggcggttcattccaatgtggcgacccctgagaaATACGCaactaagccgaaggtaaatgaatgaatgaacaaatgaaataaaataatgattccTCCAATTGTCAGCGCTGAAAGTTCTAAACTTCGTAATATTATGGAAACTGCCATACATTTGACTTTTAGGATTCTTTTTAACGtttaaaaataatagcttttatttatggtctttttttacattaccat

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-2192 Predicted to enable GTPase activator activity and metal ion binding activity. Orthologous to human GIT2 (GIT ArfGAP 2).

Ensembl:

ensembl_id ENSDART00000062795

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005937 lncRNA upstream 3001 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005935 lncRNA upstream 85171 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00005936 lncRNA upstream 149598 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005934 lncRNA upstream 366495 39909138 ~ 39917508 (+) True XLOC_002359
TCONS_00005731 lncRNA upstream 503154 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005732 lncRNA downstream 218388 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005733 lncRNA downstream 312356 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00004529 lncRNA downstream 622190 40939664 ~ 40964812 (+) True XLOC_002406
TCONS_00004545 lncRNA downstream 1633726 41951200 ~ 41954185 (+) True XLOC_002416
TCONS_00005938 lncRNA downstream 1665523 41982997 ~ 41986283 (+) True XLOC_002417
TCONS_00004479 mRNA upstream 8689 40235959 ~ 40275314 (+) False XLOC_002361
TCONS_00004476 mRNA upstream 9544 40160502 ~ 40274459 (+) False XLOC_002361
TCONS_00004477 mRNA upstream 9544 40204175 ~ 40274459 (+) False XLOC_002361
TCONS_00004478 mRNA upstream 9544 40214877 ~ 40274459 (+) False XLOC_002361
TCONS_00004475 mRNA upstream 170007 39952995 ~ 40113996 (+) True XLOC_002360
TCONS_00004483 mRNA downstream 3593 40321067 ~ 40328823 (+) False XLOC_002363
TCONS_00004484 mRNA downstream 6921 40324395 ~ 40328989 (+) True XLOC_002363
TCONS_00004485 mRNA downstream 231142 40548616 ~ 40549641 (+) True XLOC_002365
TCONS_00004488 mRNA downstream 244218 40561692 ~ 40562717 (+) True XLOC_002368
TCONS_00004489 mRNA downstream 251261 40568735 ~ 40569766 (+) True XLOC_002369
TCONS_00004473 other upstream 523124 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004472 other upstream 584516 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004447 other upstream 1600223 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 1735798 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 1795174 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004486 other downstream 233256 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 237443 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 282461 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004495 other downstream 290227 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004496 other downstream 291987 40609461 ~ 40609953 (+) True XLOC_002376

Expression Profile

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