RNA id: TCONS_00005934


Basic Information

Item Value
RNA id TCONS_00005934
length 2022
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id XLOC_002359
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39909138 ~ 39917508 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

attttattgAATATTAACCATTTTTAATTTCAAATGAATAATAAAGTAACCttctaaaatgcttttttaatgtaatttctttTAGTTCTGTTGGTCTCTGGAAAACAGGTGGAGGTTTAAAGCTTGTTCAACCACAGAGCAACAGAGAAGGTAAAGGTTCTGTAAAGCTGACCTATTATCTCAAAAACATCTATTTTCTGaatctgtaaaatatttatttaatatatgttttttattgaaaattacaTTCTTAAATTTTCAAGCCTTTTATTCTTTAGGTTTTTAGAATTTGATTGAATTTTCTATCCAAATCTCCAGATACCAATTGCCTACATTGGAGTTTTAACTATTTTTAATCTCAAATGAATAACAAAGAAACCTTCTTAGTGCATTTCTTTCAGTTCTGTAGGTCTCAAAAAAGCAGGTGAAGGTTCAAAGCTTGTTCAACCACAGTAACAGAGTAAGGTTCTGGAAAGTCAACTTTGTACCTCAAAATCAACtttaaatgttcatacatttcCACCGAGCTTTTTATTCTTAAGGTTTttagaattgaattgaatttctgATACTAAATTTCCTGACACCAATAGTCTACAATAGagttttaaccatttttaatcTCCAATAATTAAAGTAACCTTCATCACGGCTTtttagggctttttttttttccagatctgTTGGTGTCGTGAAAGCAGGTGGAGGTTTAAAGCTTGGTGAACCACAGCGCAACAGAGAAGTTCTGTTGGTCTCTGAAAAGCAGGTGAAGGTTTAAACTTTAAAGCTTGGAAAAAGGAACAAGATAAGGTTCACCAAAACCCAGCAGAATGGATTAAAGACTCGAATTGCGGTTTCCAGTCCAGACACGTTTCTGTTTCGCGAAGCCTTGTCGTGGATGAAATACAGATCGGATGGTCTTTGATCAGAGCTCTAAATCAAAGCTGAACGCTGAACATGAATCTCAGCGAAGCCTGTGACACATGTCAGGCGAAGAGCAGTGGATGGAAGTTCAGGCAGAgtaatggagagagagagagagagctgaggAAAGATGCTGACGTGATCCTCTGTTCTGCGTGATTGTCTCATCTTCTAAGTGACGTTATGGATTGAATATTGACGTGCGCTTGAAGCAGCAGCGCAACAAGGACGCAGCGCTGGGCCAGAAATGCTGATCTGAGGACAGCGTTTGGGACGCAGCAGCGGCCGGTGTTTGAATGAAGGCTGCAGTGTTTCTGTTGAGCTTCTCACAGGGGAACGGGAGCTTTTCAATAATGCAGGACAGCCGAGGAGAGTCAGGATGTCACTCCACTGCATGTCTGTGTGGGACGGGAAACACGGATAGACGGCATGCTCAgaaagacgaaaaaaaaaaaaacaagagccaATCCTGTCTGTGACTTTGACACATTGGAGTCATTTATAAAAGAAGTGAACTCTGGAGATGGACAGTGCTGAGGTCAGTGCTCCACCTCAGACGCCCTGCAGACTCTCACATCCAGTGTTTGCTTTTCTCTTTATCCACACGTGATGACTGTGTTTCAAATTATGGGttgcatttcctgttttgtgGAGCACTTCTGTTTTAAAGAACTAAAAGAAATCAACACATCCTTACTATGTAGTATATGAAATAATTcttccttatatttatatagcgcttttctgggcatgCAAAATGCTTTACAcctaggggggaatctcctcattcaccaccagtgtgcagcatccacctggatgacgcgacggctgCCATTTTACACCagacacacaccagctgattggtgatgAGGAGACAGAGTCATGAACCCAGTTATGATATGGGAAGGTTAGAAGgcaatgatggacagaggccagtgggcagattttggCCAGGGTGCCGGTGTTAAACCCCTAgtcttttttgaaggacatcctgggattttcaacgaccacagagagtcgggacctcagtttaacgtctcatctgaaagacagcgctcactaagcagtatagagtcctcgtcactatactggggc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005731 lncRNA upstream 128289 39780561 ~ 39780849 (+) True XLOC_002357
TCONS_00005730 lncRNA upstream 515322 39329302 ~ 39393816 (+) True XLOC_002354
TCONS_00004466 lncRNA upstream 623521 39283996 ~ 39285617 (+) True XLOC_002352
TCONS_00004454 lncRNA upstream 821285 39084012 ~ 39087853 (+) True XLOC_002346
TCONS_00005933 lncRNA upstream 1149929 38749366 ~ 38759209 (+) True XLOC_002344
TCONS_00005935 lncRNA downstream 204866 40122374 ~ 40198832 (+) False XLOC_002361
TCONS_00005936 lncRNA downstream 205091 40122599 ~ 40134405 (+) False XLOC_002361
TCONS_00005937 lncRNA downstream 356750 40274258 ~ 40281002 (+) True XLOC_002361
TCONS_00005732 lncRNA downstream 618354 40535862 ~ 40536526 (+) True XLOC_002364
TCONS_00005733 lncRNA downstream 712322 40629830 ~ 40630494 (+) True XLOC_002378
TCONS_00004474 mRNA upstream 3885 39893439 ~ 39905253 (+) True XLOC_002358
TCONS_00004469 mRNA upstream 67719 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004468 mRNA upstream 67719 39476432 ~ 39841419 (+) False XLOC_002355
TCONS_00004471 mRNA upstream 67719 39692241 ~ 39841419 (+) False XLOC_002355
TCONS_00004470 mRNA upstream 83430 39476600 ~ 39825708 (+) False XLOC_002355
TCONS_00004475 mRNA downstream 35487 39952995 ~ 40113996 (+) True XLOC_002360
TCONS_00004476 mRNA downstream 242994 40160502 ~ 40274459 (+) False XLOC_002361
TCONS_00004477 mRNA downstream 286667 40204175 ~ 40274459 (+) False XLOC_002361
TCONS_00004478 mRNA downstream 297369 40214877 ~ 40274459 (+) False XLOC_002361
TCONS_00004479 mRNA downstream 318451 40235959 ~ 40275314 (+) False XLOC_002361
TCONS_00004473 other upstream 148259 39760754 ~ 39760879 (+) True XLOC_002356
TCONS_00004472 other upstream 209651 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004447 other upstream 1225358 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004441 other upstream 1360933 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004438 other upstream 1420309 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004486 other downstream 633222 40550730 ~ 40550954 (+) True XLOC_002366
TCONS_00004487 other downstream 637409 40554917 ~ 40555131 (+) True XLOC_002367
TCONS_00004493 other downstream 682427 40599935 ~ 40600502 (+) True XLOC_002373
TCONS_00004495 other downstream 690193 40607701 ~ 40608717 (+) True XLOC_002375
TCONS_00004496 other downstream 691953 40609461 ~ 40609953 (+) True XLOC_002376

Expression Profile

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