RNA id: TU1629041


Basic Information

Item Value
RNA id TU1629041
length 732
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1423067
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 15495060 ~ 15495865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTTCCACATGTAGAAAAATAGTTTTAATCCATAGCACCAGTAGTAAATCAATGCATCTATTTGACAGGGtaataaaaacaaacatcttattttacacaacaaaaacacaacagGTGAAGGTAGGCTAAAATGTCCTTACATTAAAAGGCACTGACTGGTAACAGGTTTATATGAACAGAGGAAGATGCATGGTAGGAAATCTATGCAGCAATGTGAGATTACAGTATACTATGTTTATTTTAGTAGACATTAATGTAACTCCATGTCTACatctcaaattgcaccctatgtagtgcactacttctgaccagggcacaGAGCTCTgctccaaagtagtgcactatatagggaagagggccctgttctaaagtagtgcactatatagggaagagggccctgttctaaagtagtgcactatatagtgaatagggtgccatttgggacacaaacaacAGGGCAGAATGAaattgaacaaaaataaacaagtaGTACTGTACAGTTGATAAGTCAACATTTAAAACTATGGTCAACATTGGCTGACAAAACCAAAGACTTTCAACATACACACGTTAACACAAAAATAATAAGGGAGATTAAAAGATAATGTCCACATGTTGTATCATGTAATCTAGAACTGACTCACATCATAAAGATGATCGCACATTAGTAAAACGGTTTCCAGCAAGACTCAGGGTGTATCAACCACGCCAGATGACCCTTCAGCTTTTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1629042 lncRNA downstream 772 15493849 ~ 15494288 (-) True G1423068
TU1629030 lncRNA downstream 11583 15483142 ~ 15483477 (-) True G1423060
TU1629022 lncRNA downstream 23019 15471825 ~ 15472041 (-) True G1423053
TU1629000 lncRNA downstream 68758 15377339 ~ 15426302 (-) True G1423032
TU1629006 lncRNA downstream 96472 15398168 ~ 15398588 (-) True G1423038
TU1629043 lncRNA upstream 1816 15497681 ~ 15497991 (-) True G1423069
TU1629044 lncRNA upstream 5267 15501132 ~ 15502500 (-) True G1423070
TU1629045 lncRNA upstream 7059 15502924 ~ 15503151 (-) True G1423071
TU1629050 lncRNA upstream 13698 15509563 ~ 15509806 (-) True G1423075
TU1629074 lncRNA upstream 48465 15544330 ~ 15544573 (-) True G1423093
XM_036948329.1 mRNA downstream 26804 15444480 ~ 15468256 (-) True LOC118936458
XM_036948328.1 mRNA downstream 56655 15288411 ~ 15438405 (-) False LOC118940092
XR_005036852.1 mRNA upstream 118999 15614864 ~ 15625537 (-) False LOC118940331
XR_005036851.1 mRNA upstream 118999 15614864 ~ 15625543 (-) False LOC118940331
XM_036948330.1 mRNA upstream 131683 15627548 ~ 15704265 (-) False LOC110485613
XM_036949091.1 mRNA upstream 248350 15744215 ~ 15760194 (-) True LOC110487262
XM_036949087.1 mRNA upstream 281822 15777687 ~ 15797879 (-) True LOC110485609
TU1628867 other downstream 81463 15397290 ~ 15413597 (-) True G1422920
TU1628865 other downstream 89886 15383119 ~ 15405174 (-) True G1422918
TU1628810 other downstream 141970 14926365 ~ 15353090 (-) False G1422891
TU1629094 other upstream 87830 15583695 ~ 15584093 (-) True G1423112
TU1629986 other upstream 312821 15808686 ~ 15831010 (-) True G1423836
TU1630061 other upstream 489408 15985273 ~ 15986842 (-) True G1423891
TU1630241 other upstream 873892 16369757 ~ 16370443 (-) True G1424040
TU1630255 other upstream 910866 16406731 ~ 16410128 (-) False G1424051

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU401536 True 773 lncRNA 0.42 1 NC_047617.1 5854658 ~ 5855430 (+)