RNA id: TCONS_00049245


Basic Information

Item Value
RNA id TCONS_00049245
length 986
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_024192
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 30038091 ~ 30045798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGTTTCACACCGAACTTCTCGCATAGCCTCACCAGTTTATAATTGCCGCTGAACTCACAATTACATTATTGACGACCAGTTCTGGGATTGTGGGAATAAATGAAAGCTCTGTACGGCGGAGGAGCGTCGCACTTACCGCAGTACAGGACCAGCAGAGCGCTCAACAGCAGCACAAGCCAGAAAGTTGAGGACATCGTCAGCCACGCATCCCTCCGTCTGCTCCTCTTCCTAAAGGGCGAAGCCATCAAAGTCAGTCTCAATTCTCCAGTCAAATTAGCCTCCAATCAGGCGCTTATAGCCAGCAGCTATTCACGCTTCGGCTTTCGTTTCAAAGTTGCCATGAAGAAACGAGAGAGAAGCGGTGCGACCGTATCCGTGAGGAGAGCTGAGTGAGACTGCAAATGAAGAAGCGGGTCCTCCGTTTGAGATACTGCTGGTGATGTGTTTAAGAATATTCAAGGACACGTATCAAAattgtgtctgtgcgtgtgagTGCCGCGCAGTTTCACTAAGGAGACAATATACTGCGTTTGGTGGAAGGGGCAAGGAAATGTCACGAGAGAAGAACATTACTCAGCCACTTAAGAGGAAGAAACCTTCAAAACAACACACGACACGTGAAGGATTAAAGACATTCGACAGCGATCTGATAGGACCTGAGGGAACAGTCAAGGTCCTTGTCACTCTGTTTATGAGATGGATTAAACACAAGTGACTGACAGAGACTATGTCTTTACGTCAGAAAAAAAACGGATAAAGCTTCTTATGTGATTAtgtaaccggttattactgaatGTTATATTGTAGTTGTTATTGTTGTGTAGTTTGGATTTAATTGCGATTGCTTCCCTTTCTCATTACTTGTTTTGAACTGTTTATTATCCGGAGACTGCTTGGAATTAAATAACGGGGAGTGATAATATCATTCCTGTATCTTCCGTTCATTATTACTTCATAAAGCTCTTTGTTAAAAGCCATTTAAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047951 lncRNA upstream 634818 29393532 ~ 29403273 (+) True XLOC_024188
TCONS_00047950 lncRNA upstream 655733 29373563 ~ 29382358 (+) True XLOC_024187
TCONS_00047947 lncRNA upstream 965793 28989285 ~ 29072298 (+) True XLOC_024185
TCONS_00049053 lncRNA upstream 1065306 28972344 ~ 28972785 (+) True XLOC_024184
TCONS_00049052 lncRNA upstream 1069009 28968233 ~ 28969082 (+) True XLOC_024183
TCONS_00047961 lncRNA downstream 126117 30171915 ~ 30194075 (+) False XLOC_024195
TCONS_00049247 lncRNA downstream 126157 30171955 ~ 30194075 (+) False XLOC_024195
TCONS_00049248 lncRNA downstream 126157 30171955 ~ 30194075 (+) False XLOC_024195
TCONS_00049250 lncRNA downstream 126157 30171955 ~ 30194075 (+) False XLOC_024195
TCONS_00049249 lncRNA downstream 126157 30171955 ~ 30194075 (+) False XLOC_024195
TCONS_00047957 mRNA upstream 323566 29694158 ~ 29714525 (+) True XLOC_024191
TCONS_00047956 mRNA upstream 327204 29688671 ~ 29710887 (+) False XLOC_024191
TCONS_00047955 mRNA upstream 371189 29662411 ~ 29666902 (+) True XLOC_024190
TCONS_00047953 mRNA upstream 541089 29474583 ~ 29497002 (+) False XLOC_024189
TCONS_00047954 mRNA upstream 541089 29474982 ~ 29497002 (+) True XLOC_024189
TCONS_00047958 mRNA downstream 29149 30074947 ~ 30114384 (+) False XLOC_024193
TCONS_00047959 mRNA downstream 59830 30105628 ~ 30114251 (+) True XLOC_024193
TCONS_00047960 mRNA downstream 85257 30131055 ~ 30152039 (+) True XLOC_024194
TCONS_00047964 mRNA downstream 150241 30196039 ~ 30230559 (+) False XLOC_024197
TCONS_00047967 mRNA downstream 187840 30233638 ~ 30264796 (+) False XLOC_024198
TCONS_00047922 other upstream 1534126 28503850 ~ 28503965 (+) True XLOC_024172
TCONS_00047921 other upstream 1736643 28301324 ~ 28301448 (+) True XLOC_024171
TCONS_00047914 other upstream 1771467 28240091 ~ 28266624 (+) False XLOC_024168
TCONS_00047912 other upstream 2076697 27961280 ~ 27961394 (+) True XLOC_024167
TCONS_00047903 other upstream 2421037 27616938 ~ 27617054 (+) True XLOC_024162
TCONS_00047963 other downstream 130673 30176471 ~ 30176559 (+) True XLOC_024196
TCONS_00047974 other downstream 271041 30316839 ~ 30337989 (+) True XLOC_024200
TCONS_00047979 other downstream 926046 30971844 ~ 30971960 (+) True XLOC_024207
TCONS_00047980 other downstream 935535 30981333 ~ 30981447 (+) True XLOC_024208
TCONS_00048011 other downstream 2536942 32582740 ~ 32611439 (+) True XLOC_024226

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU272332 True 205 lncRNA 0.51 1 CI01000055 4801341 ~ 4801545 (+)
eurasian perch (Perca fluviatilis) TU272332 True 234 lncRNA 0.45 1 NC_053131.1 8906556 ~ 8906789 (+)