RNA id: TU272332


Basic Information

Item Value
RNA id TU272332
length 205
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G240020
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4801341 ~ 4801545 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTACTTACCGCAGTACAGGATCAGCAGACCGCTCAACAGCACCACAACCCAGAAAGTTGAGGACATCGTCAGCCACGCATCCCGCTGCCTAGTCCTCTTCCTAAAGGGCGAAGCCATCAAAGTCAGTCTCAATTCTCCAGTCAAATTAGCCTCCAATCAGGCTCATATAGCCAGCAGCTATTCACGCGTCGGCTTTCGTCTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272305 lncRNA upstream 7336 4793787 ~ 4794005 (+) True G240000
TU272303 lncRNA upstream 10438 4790685 ~ 4790903 (+) True G239998
TU272249 lncRNA upstream 121266 4679812 ~ 4680075 (+) True G239944
TU272243 lncRNA upstream 127157 4673912 ~ 4674184 (+) True G239938
TU272242 lncRNA upstream 158261 4642736 ~ 4643080 (+) True G239937
TU272326 lncRNA downstream 52252 4853797 ~ 4863837 (+) True G240014
TU272310 lncRNA downstream 136672 4938217 ~ 4970652 (+) True G240004
TU272369 lncRNA downstream 171623 4973168 ~ 4973408 (+) True G240052
TU272382 lncRNA downstream 191320 4992865 ~ 4993344 (+) True G240055
TU272388 lncRNA downstream 200063 5001608 ~ 5002128 (+) True G240061
CI01000055_04653437_04666121.mRNA mRNA upstream 134294 4653382 ~ 4667047 (+) True CI01000055_04653437_04666121
CI01000055_04644727_04647551.mRNA mRNA upstream 152736 4644130 ~ 4648605 (+) True CI01000055_04644727_04647551
CI01000055_04565665_04574485.mRNA mRNA upstream 226636 4565665 ~ 4574705 (+) True CI01000055_04565665_04574485
CI01000055_04429659_04441786.mRNA mRNA upstream 358810 4429659 ~ 4442531 (+) True CI01000055_04429659_04441786
CI01000055_04334410_04337430.mRNA mRNA upstream 463911 4334304 ~ 4337430 (+) True CI01000055_04334410_04337430
CI01000055_04815417_04830336.mRNA mRNA downstream 13701 4815246 ~ 4830907 (+) True CI01000055_04815417_04830336
CI01000055_04834611_04844496.mRNA mRNA downstream 33066 4834611 ~ 4845302 (+) True CI01000055_04834611_04844496
CI01000055_04869576_04887020.mRNA mRNA downstream 67938 4869483 ~ 4887959 (+) True CI01000055_04869576_04887020
CI01000055_04888583_04898249.mRNA mRNA downstream 87038 4888583 ~ 4898368 (+) True CI01000055_04888583_04898249
CI01000055_04906688_04910244.mRNA mRNA downstream 102415 4903960 ~ 4910978 (+) True CI01000055_04906688_04910244
TU272088 other upstream 528626 4264027 ~ 4264066 (+) True G239802
TU272029 other upstream 546249 4254210 ~ 4255092 (+) True G239755
TU272036 other upstream 587939 4162250 ~ 4213402 (+) True G239761
TU271353 other upstream 2257223 2541122 ~ 2541235 (+) True G239173
TU272472 other downstream 363947 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 734973 5536518 ~ 5543812 (+) True G240099
TU272585 other downstream 812833 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 813087 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272705 other downstream 1285280 6086825 ~ 6086887 (+) True G240319

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049245 False 986 lncRNA 0.44 2 NC_007136.7 30038091 ~ 30045798 (+)