RNA id: TU272243


Basic Information

Item Value
RNA id TU272243
length 273
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G239938
representative True

Chromosome Information

Item Value
chromosome id CI01000055
NCBI id null
chromosome length 6774723
location 4673912 ~ 4674184 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAAAATATAAGTCAAATTTAAGTTGTAACAACAGATTTTTTTTATTTGTTCACAACATAATAGAAAGGGCTTACCTTGCAGTGTTGCCAATTGCTTTCAGTTGAAAGTAGCTAAAACTGGTCTCTAAATGTCTCTAGGTGACGTCATACTGGCGAGTCCACTGATCTATATTAATATAAATATAGATCAGTGGGCGAGTCACAGAATCTAGATAAGGTTTGTCCAAGAAGTTACTAGATTTGTCACTAGGCTTTTGAAAAAAGTCTCAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272242 lncRNA upstream 30832 4642736 ~ 4643080 (+) True G239937
TU272240 lncRNA upstream 33555 4640057 ~ 4640357 (+) True G239935
TU272239 lncRNA upstream 33938 4639722 ~ 4639974 (+) True G239934
TU272200 lncRNA upstream 140900 4532790 ~ 4533012 (+) True G239901
TU272199 lncRNA upstream 142010 4531697 ~ 4531902 (+) True G239900
TU272249 lncRNA downstream 5628 4679812 ~ 4680075 (+) True G239944
TU272303 lncRNA downstream 116501 4790685 ~ 4790903 (+) True G239998
TU272305 lncRNA downstream 119603 4793787 ~ 4794005 (+) True G240000
TU272332 lncRNA downstream 127157 4801341 ~ 4801545 (+) True G240020
TU272326 lncRNA downstream 179613 4853797 ~ 4863837 (+) True G240014
CI01000055_04653437_04666121.mRNA mRNA upstream 6865 4653382 ~ 4667047 (+) True CI01000055_04653437_04666121
CI01000055_04644727_04647551.mRNA mRNA upstream 25307 4644130 ~ 4648605 (+) True CI01000055_04644727_04647551
CI01000055_04565665_04574485.mRNA mRNA upstream 99207 4565665 ~ 4574705 (+) True CI01000055_04565665_04574485
CI01000055_04429659_04441786.mRNA mRNA upstream 231381 4429659 ~ 4442531 (+) True CI01000055_04429659_04441786
CI01000055_04334410_04337430.mRNA mRNA upstream 336482 4334304 ~ 4337430 (+) True CI01000055_04334410_04337430
CI01000055_04815417_04830336.mRNA mRNA downstream 141062 4815246 ~ 4830907 (+) True CI01000055_04815417_04830336
CI01000055_04834611_04844496.mRNA mRNA downstream 160427 4834611 ~ 4845302 (+) True CI01000055_04834611_04844496
CI01000055_04869576_04887020.mRNA mRNA downstream 195299 4869483 ~ 4887959 (+) True CI01000055_04869576_04887020
CI01000055_04888583_04898249.mRNA mRNA downstream 214399 4888583 ~ 4898368 (+) True CI01000055_04888583_04898249
CI01000055_04906688_04910244.mRNA mRNA downstream 229776 4903960 ~ 4910978 (+) True CI01000055_04906688_04910244
TU272088 other upstream 401197 4264027 ~ 4264066 (+) True G239802
TU272029 other upstream 418820 4254210 ~ 4255092 (+) True G239755
TU272036 other upstream 460510 4162250 ~ 4213402 (+) True G239761
TU271353 other upstream 2129794 2541122 ~ 2541235 (+) True G239173
TU272472 other downstream 491308 5165492 ~ 5166647 (+) True CI01000055_05163240_05166231
TU272428 other downstream 862334 5536518 ~ 5543812 (+) True G240099
TU272585 other downstream 940194 5614378 ~ 5616353 (+) False CI01000055_05614889_05616453
TU272586 other downstream 940448 5614632 ~ 5617591 (+) True CI01000055_05614889_05616453
TU272705 other downstream 1412641 6086825 ~ 6086887 (+) True G240319

Expression Profile