RNA id: XM_036955451.1


Basic Information

Item Value
RNA id XM_036955451.1
length 3331
RNA type mRNA
GC content 0.53
exon number 12
gene id jade1
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 67001335 ~ 67087574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATGGCGCCAATATTAAAGTTCAGCGGGCCATCGAATCTGGCATAATGTTTCATAATAAACACTAATTATATCCACACTCTCTAACGCGTCCATATGCAGAGTGGAGGCACAATACTGGGGTCAAGCGATACTATACATCTCGGCTAAATTCGTTGAGTGGGAACTTTTAGCATTAGCTAGGCTAGCTAACGTGCGAACGTTACGTGGCTTAAAGCAGATAGCTACTAGATAGcttagctagttaactagctgCCGTGTTTACTAGTTAGGGGGTGCTGCGGCGACAAGCAGCCTCAGCCAAGTTGGCACGTCAGGCATGCTATCTTTCAGTGACAAACATGTTTTCTTATTTACTTGTTCGTATAGCTCAACTAGCTGCGAATGCTTGTTTGTTTGACACGTTGTCGCAGGTTGTGCTTGGTCAACATGAGATTACACCTTGACCTCGCCAAGACTGACCATGAAGAGAGGTCGGCATCCAAGCAGCAGTGAAGAAGACTCTGATAATGGAAGTAACTCCACTTCCTGGTCCCAACATTCTCAACCCAGGAGAGCCAATTGGAAGAAGCCCTCAGAAGCTTGGGAAGTAGACCATATATATCGTATACCGGGTTATTTGGAGAAGGCAATGGTGTTCAGGACAGACTTCATCACGGCCATGAAGCTCCATGACACGTACCAACTGAACCCTGAGGATTACTACGTCCTGGCCGACCCCTGGAGACAGGAGTGGGAGAAGGGAGTCCAGGTCCCTGTCAGTCCTCACACCATCCCCCAGCCTGTAGCCCGGGGAGTGGCTGAGCGGGGGATGGAGGTGATGTTCTCGACGCCTAAGAAGTGGATCCGTTCGGGGTGTTCAGGGGCGCTGGGGTACGTGGACATCCAGACCCTGGCTGAGGGGACGTGTCGTTACGACCTCAACGACACTGACGTGGCCTGGCTGGAGCTCATCAACCAGCAGTTCACTCTGATGGGCATGGTGCTGCTGGACGAGATGACcatggagagagtgatggaggagtTTGAGAGGCGTTGCTATGACAGAATGAGCCATGCCATGGCAACGGAGGAGGGGCTTGGCATGGAGTACGACGAGGATGTTGTGTGTGACATCTGTCGGTCACCTGACAGCGAGGACAACAACGAGATGGTTTTCTGTGACAAGTGCAACATCTGTGTTCACCAGGCGTGTTATGGGATTCTGAAGGTGCCAAAGGGAAGCTGGCTGTGTCGGACCTGTGACCTCGGTATCTCGCCAAAATGCCAACTCTGCCCCAAGAAGGGCGGGGCCATGAAACCCACTCGCAGCGGAACAAAGTGGGTTCACGTCAGCTGTGCCCTGTGGATCCCCGAGgtgagcATTGGGAACCCAGAGAAGATGGAGCCGATCACCAACATGTCCCACATCCCTAGTAACAGATGGgctctgacctgctgtctctgtaaagaccagactggagcCTGTATACAGTGTTCAGCAAAGAGCTGTCGGACAGCGTTCCATGTGAGCTGTGCCTTACAGAGCAGCCTGGAGATGAACACCATCCTGACAGAGCAGGATGAGGTCAAGTTCAAATCCTTTTGCCCCAAACACTCTGGTCTGAAGGAAGGACAGGACGGAGAGGGGACCAGAGACAAGAAGTGGCGGAAGAGTGACAGAGTCAGAGGTGATGAAGTTCCACCCCCCGTCCCAGCCCCCCAGGAGGAGAGCAGGGTGAACCAGCAGGCGGTGAACCTGCGTCAGATCAAACTGCAGCAGCTGGAGGAGCAGTTTTACCAGTTTGTTAACGTTAAGGAGGTAGCCAATCACCTGCAGTTGCCCCAGGAAACAGTAGATTTCCTGTATCAGTACTGGAAGCTGAAGCGCCGAGCCAATCACAGCCAGCCGTTGCTGACCCcccagaaggaggaggaggagagtctgGCTAGGAGAGAGCATGATGTCCTCCTCCACCGCCTACAGCTGTTCACTCACCTCCGCCAAGATCTGGAGAGGGCTCGTAACCTGACCTACATGGTGACGCGGAGGGAGAAGATAAAGAGGACTCTGTGGAGGATCCAGGAACAGATCTTTACTCATCAGGCCGAGCTGCTGGACCATGAGATCATCAACGGGTGTCTGAACGACAGTGTGCGTCTCAGTGTGGTTTCGGCCCCAGTGGCGGTGTTGGGGTACAGTGGCCTGAAGACCCAGAGGAGAGACCGAGGGAGGGGAGGGCACCGGAGAGGAGGCCTACATCTACTACACAGTCTGACTGAGGGGggtagaggacagacagacaactcCAGCAAACTGAAGACAGAAAGTAGCAGACCCAGAATAGAGGGTAGGAGGAGCCTGAGGAAGGAGGCCCCAGATCCTGAGCAGCAGCAGaagagcagcagcaggaggagagaggaggaccagggaagggtggagaggaggaggagaggagagaaggaacagaggacaggggaggaggaccATGGAACAGAGAAAAGCTCTCCAATCAAAGCCAAAACCAGACTGGGGTCAAAGGCCAGTGAGAAACCAGCCAGTAGGGTCAGTGATATGACTGATGCTAAACCAGCCAATAGAATGagtgaagctagggttaggttaacTAGGATCAAGGTTCATCATGTGACTGAGGCTAGGGTCAGGTTaacgagggttagggttactgaTCATGTGACTGAAGTGAAGGGAAGGAAGGTGAGGCTCAGCGGAACATACAGCCAATCTGATCCCAGAGACACCAATGTATCcatgacaaccaaacacaatagTTGGTTGGCCAGTGGGCCTGGTGGCAGCCATCTTAAGAACTGGGGTAAGTTCAGAATCCCGAAGAGGAGCGAGAGGCCAGAGGAGCCATCAAACCCCAACCCCCCACAGCACAGACCTCTTAACCCCAACCCCCCACAGCGCAGAcctcctaaccccaaccccccACAGCGTAGACCTCCCAACCCCCCACAGCGCAGGCCACTGCATAGTGAGCCGTCGTACCCCAGGAGACGACTCCGTACAGAGAGCGATGGGTACTCCTCTAACTCTGAAACTCCACCCAGTGGGCTGGACATGAAGGCATGTCTGAAGAGATGCCACGCCCACCAGCTGAGGGGTGGGGCCTATGGCTCTGACATCATCCACCAAGGGGTTCTAGCCTCCTGATGACATCATCCTGCTGAGATGCAACACTTGAAACAAACAGCACCATGTTTATAGAAAATGAAGCTAGCCCAAGGTTGCTTTTTATAATCAAATTTACAGAACTGATATTTATTTTATCATTTGTAAGGttgtatatattttaaattctgtTATCAATAAAAAGTGAAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1889295 lncRNA upstream 18370 66983201 ~ 66983426 (+) True G1650524
TU1889293 lncRNA upstream 21603 66979988 ~ 66980193 (+) True G1650522
TU1889258 lncRNA upstream 34141 66949541 ~ 66967655 (+) True G1650494
TU1889238 lncRNA upstream 81155 66920376 ~ 66920641 (+) True G1650475
TU1889236 lncRNA upstream 86484 66915081 ~ 66915312 (+) True G1650473
TU1889497 lncRNA downstream 98196 67185770 ~ 67186227 (+) True G1650705
XM_021574953.2 mRNA upstream 6287 66986831 ~ 66995509 (+) True LOC110498319
XM_036955440.1 mRNA upstream 26549 66942713 ~ 66975247 (+) False LOC110498318
XM_036955441.1 mRNA upstream 26549 66942713 ~ 66975247 (+) False LOC110498318
XM_036955442.1 mRNA upstream 26549 66942713 ~ 66975247 (+) True LOC110498318
XM_021593675.1 mRNA upstream 278200 66718434 ~ 66723596 (+) True cfd
TU1888162 other upstream 1025556 65971455 ~ 65976240 (+) True G1649614
TU1887742 other upstream 1188980 65734614 ~ 65812816 (+) False LOC110498653
TU1887771 other upstream 1399380 65600960 ~ 65602416 (+) True G1649319
TU1887755 other upstream 1419214 65578439 ~ 65582582 (+) True G1649309
TU1887728 other upstream 1456741 65544377 ~ 65545055 (+) True G1649291

Expression Profile