RNA id: TCONS_00049619


Basic Information

Item Value
RNA id TCONS_00049619
length 2281
RNA type mRNA
GC content 0.53
exon number 18
gene id XLOC_025085
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9588705 ~ 9626674 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCAGTTGCAGTCTTCTATAGGTcaaactacagcagcagaaatgaTCCGATCGttgaatttactgaaatattcttTAAATGTGTCCCAGCGGGCTCAGCTCAGGCTGCTCTCATCCAGCAGAGGGACCGGACACAGGATAGTGCCCGCCGCATTCATTGGAGTGGACACAAATGGCAGACAGCAGCTGCATCAGCCCAGACCCTTCAGACTGTGGAGCCCCAGCTGTTCTGGGGTCAGTGTTCATCATGGCAGCTACAGCACTCAGCAGCACACAGAGCCTGCAGAGGAGGAGACGCTCCACAACATCATCACAGACACCGAGAACGTTCAAGGATCCTTCTCCAAACACGAGTTTCAAGCAGAGACGAAGAAACTGCTGGATATTGTGGCCAGATCGCTGTATTCTGAGAAAGAGGTGTTCATCAGGGAGCTGATCTCTAACGGCAGTGATGCTCTGGAGAAACTGCGGCACAGGATGATCACGGCTGGAGGAGACACAGCACCAATGGAGATCCACCTGCAGACGGACAGCGCTAAAGGCACCTTCACCATACAGGACACTGGTGTGGGGATGAACAAAGAGGATCTGGTTTCCAACCTGGGCACGATTGCTCGATCTGGATCAAAGGCTTTTCTGGACGCTCTGCAGAATCAAGCGGAGGCCAGCAGCTCCATCATTGGTCAGTTTGGTGTGGGCTTTTACTCCGCCTTCATGGTGGCCGATAAGGTGGAGGTTTATTCTCAGTCGGCAGAAGCAGATGCTCCTGGATACAAGTGGTCCTCAGACGGctcTGGAGTGTTTGAGGTCGCTGAAGCTTCAGGTGTTCGACAGGGAACCAAGATTGTGCTCCACCTTAAAGACGACTGCAAAGAGTTTTCATCAGAGGACAGAGTTAAAGAGGTGGTGACCAAGTACAGCAACTTTGTGAGTTTCCCCATCTTCCTGAATGGACGGAGACTCAACACCCTGCAGGCACTCTGGATGATGGAGCCCAAAGACATCAGCGAGTGGCAGCACGAGGAGTTTTATCGATATGTGGCTCAAGCCTACGATAAACCGCGATACACACTCCACTACCGCGCAGACGCTCCGCTCAACATCCGCAGTATCTTCTACGTGCCAGAAATGaagCCGTCCATGTTCGATGTGAGTCGTGAGATGGGCTCCAGTGTGGCTCTGTACAGCAGAAAAGTCCTGATTCAAACCAAAGCCACAGACATCCTGCCCAAGTGGCTGCGCTTCCTACGAGGTGTTGTGGACAGTGAGGATATTCCTCTAAACCTCAGCAGAGAGCTGCTACAGGAAAGCGCCCTGATCAGGAAACTGCGGGATGTTTTACAGCAGCGTGTCATTCGATTCCTGTTGGACCAGAGTAAGAAGGACCCGGAGAAATACGCTCGCTTCTTCGAGGACTACGGGCTGTTCATGCGTGAGGGCATCGTGACCACAGCCGAGCAGAGTGTCAAGGAGGACATTGCTAAACTGCTGCGCTTCGAGTCGTCAGCTCTACCTGCGGGACAGCAGACCAGCCTGATGGAGTATTCCTCCCGCATGAAGGCAGGAACCAGGAACATTTATTACCTGTGTGCGCCGAATCGACACCTGGCCGAACACTCGCCGTACTTCGAGGCCATGAAACAGAAAGATATGGAGGTCTTGTTCTGCTTCGAGCAGTTTGACGAGCTCACGCTTCTTCACCTCCGAGAGTTCGACAGGAAGAAGCTGATCTCCGCTGAGACGGACATCGTTGTAGATCACTACAAAGAGGAGAAATTCCAGGACAGCAAGCCAGCATCTGAGCGGTTGAGCAGTGAACAGGCTGAAGATCTGCTGGCCTGGATGAGGAACGCACTCGTTCAGAGAGTCACCAACATCAAGGTGACTCCTCGTCTGGACACTCACCCGGCCATGATCACAGTGCTGGAGATGGGAGCCGCTCGACACTTTCTGCGCACACAGCAGCTGGCCCGCAGCTCCGAGGAGAGAGCCCAGATCCTGCAGCCCACGCTGGAGATCAACACTGGGCATGATCTGATCAAGAAGCTTCATGCGCTGAAGGACTCAAACCCTGAGCTGGCACAGCTTCTGCTCGAACAGATTTACGACAACGCCATGATCGCCGCTGGCCTGAACGAAGACCCTCGTCCGATGATCTCTCGACTGAATCAGCTGTTGACGCGAGCGCTGGAGAAACACTGAGTTCGGCTCTCAGACAGACTTGTTTTGCCATTATTAGGGACATGCACTGATGCACAGGGCGTCTCTCTTGCGTCCTGGA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030131-4257 Enables ATP hydrolysis activity; identical protein binding activity; and metal ion binding activity. Involved in nucleic acid phosphodiester bond hydrolysis. Predicted to be active in mitochondrial inner membrane. Orthologous to human TRAP1 (TNF receptor associated protein 1).

Ensembl:

ensembl_id ENSDART00000104875

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052594 lncRNA upstream 555716 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052325 lncRNA upstream 608513 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052324 lncRNA upstream 610039 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052323 lncRNA upstream 712898 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052593 lncRNA upstream 738999 8847767 ~ 8849729 (+) True XLOC_025065
TCONS_00052595 lncRNA downstream 97892 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052596 lncRNA downstream 553987 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052597 lncRNA downstream 1120496 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00052598 lncRNA downstream 1307582 10933486 ~ 10938406 (+) False XLOC_025091
TCONS_00052599 lncRNA downstream 1310285 10936189 ~ 10938406 (+) True XLOC_025091
TCONS_00049617 mRNA upstream 166280 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049616 mRNA upstream 245955 9332984 ~ 9342773 (+) False XLOC_025083
TCONS_00049615 mRNA upstream 245955 9332984 ~ 9342773 (+) True XLOC_025083
TCONS_00049612 mRNA upstream 504821 9082255 ~ 9083907 (+) False XLOC_025082
TCONS_00049620 mRNA downstream 526188 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049622 mRNA downstream 1011426 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049623 mRNA downstream 1447054 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049624 mRNA downstream 1475681 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049625 mRNA downstream 1922612 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049609 other upstream 546633 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 547160 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 547675 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 548205 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049605 other upstream 548735 9039887 ~ 9039993 (+) True XLOC_025077
TCONS_00049621 other downstream 526234 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049628 other downstream 2317645 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 3780322 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 3780547 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 4222322 13848226 ~ 13857716 (+) False XLOC_025143

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00018129 True 3268 mRNA 0.57 18 CM030135.1 2385300 ~ 2391998 (+)