Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049675 |
| length | 801 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.54 |
| exon number | 6 |
| gene id | XLOC_025143 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 13842554 ~ 13901074 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051607 | defense response to virus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| GO:0003725 | double-stranded RNA binding | molecular_function |
| GO:0003727 | single-stranded RNA binding | molecular_function |
| GO:0035925 | mRNA 3'-UTR AU-rich region binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-587 | Predicted to enable double-stranded RNA binding activity; mRNA 3'-UTR AU-rich region binding activity; and single-stranded RNA binding activity. Predicted to act upstream of or within defense response to virus. Predicted to be located in cytoplasm and nucleolus. Orthologous to human ILF3 (interleukin enhancer binding factor 3). |
| ensembl_id | ENSDART00000165808 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052620 | lncRNA | upstream | 370353 | 13476872 ~ 13477873 (+) | True | XLOC_025134 |
| TCONS_00052619 | lncRNA | upstream | 435013 | 13406537 ~ 13413213 (+) | True | XLOC_025131 |
| TCONS_00052618 | lncRNA | upstream | 442144 | 13389944 ~ 13406082 (+) | True | XLOC_025129 |
| TCONS_00052328 | lncRNA | upstream | 457388 | 13389862 ~ 13390838 (+) | False | XLOC_025129 |
| TCONS_00052617 | lncRNA | upstream | 480718 | 13360703 ~ 13367508 (+) | True | XLOC_025128 |
| TCONS_00052621 | lncRNA | downstream | 170527 | 14028243 ~ 14073770 (+) | True | XLOC_025145 |
| TCONS_00052329 | lncRNA | downstream | 343327 | 14201043 ~ 14202519 (+) | True | XLOC_025147 |
| TCONS_00049683 | lncRNA | downstream | 384403 | 14242119 ~ 14248150 (+) | False | XLOC_025148 |
| TCONS_00052330 | lncRNA | downstream | 386482 | 14244198 ~ 14248538 (+) | False | XLOC_025148 |
| TCONS_00052331 | lncRNA | downstream | 393528 | 14251244 ~ 14254765 (+) | True | XLOC_025149 |
| TCONS_00049672 | mRNA | upstream | 11163 | 13830599 ~ 13837063 (+) | True | XLOC_025142 |
| TCONS_00049671 | mRNA | upstream | 163829 | 13637383 ~ 13684397 (+) | True | XLOC_025141 |
| TCONS_00049670 | mRNA | upstream | 214895 | 13624815 ~ 13633331 (+) | True | XLOC_025140 |
| TCONS_00049668 | mRNA | upstream | 229844 | 13600714 ~ 13618382 (+) | False | XLOC_025139 |
| TCONS_00049669 | mRNA | upstream | 230492 | 13603272 ~ 13617734 (+) | True | XLOC_025139 |
| TCONS_00049678 | mRNA | downstream | 3099 | 13860815 ~ 13867736 (+) | False | XLOC_025143 |
| TCONS_00049679 | mRNA | downstream | 5037 | 13862753 ~ 13877250 (+) | False | XLOC_025143 |
| TCONS_00049680 | mRNA | downstream | 21730 | 13879446 ~ 13901074 (+) | True | XLOC_025143 |
| TCONS_00049681 | mRNA | downstream | 72144 | 13929860 ~ 13935837 (+) | True | XLOC_025144 |
| TCONS_00049682 | mRNA | downstream | 299374 | 14157090 ~ 14189022 (+) | True | XLOC_025146 |
| TCONS_00049661 | other | upstream | 441688 | 13406451 ~ 13406538 (+) | False | XLOC_025131 |
| TCONS_00049660 | other | upstream | 441903 | 13406226 ~ 13406323 (+) | True | XLOC_025130 |
| TCONS_00049628 | other | upstream | 1901269 | 11943549 ~ 11946957 (+) | True | XLOC_025104 |
| TCONS_00049621 | other | upstream | 3684665 | 10152138 ~ 10163561 (+) | True | XLOC_025087 |
| TCONS_00049609 | other | upstream | 4806131 | 9041989 ~ 9042095 (+) | True | XLOC_025081 |
| TCONS_00049684 | other | downstream | 386950 | 14244666 ~ 14244784 (+) | True | XLOC_025148 |
| TCONS_00049690 | other | downstream | 541509 | 14399225 ~ 14399652 (+) | True | XLOC_025154 |
| TCONS_00049704 | other | downstream | 817053 | 14674769 ~ 14684603 (+) | True | XLOC_025161 |
| TCONS_00049719 | other | downstream | 1833587 | 15691303 ~ 15719823 (+) | True | XLOC_025174 |
| TCONS_00049721 | other | downstream | 1898007 | 15755723 ~ 15774178 (+) | False | XLOC_025176 |
