RNA id: TCONS_00052620


Basic Information

Item Value
RNA id TCONS_00052620
length 881
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_025134
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13476872 ~ 13477873 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTGAGATTGacaaaaagacttttgtcagAATTGGAGCCTGAAGCTAAGAGAGACTGACTTAATGAACTTGATCTCAACCTTCTAGTCCTTCAAAAATGTCATGATGTAATGGGGAGTCTGAGACTGTGTTAGAATCCATATGCAGAAGTTTACTTATGGGATTAGACATAGACATCAACGGGTAAACAAGCGGAGATTCTGCAACATGCAAGCAGTTCAAACCAAACAACAAACACAGATGCAATTCCAGGAGATGTAGTGGTAATTCAAGCAGAGGATCAGTGTACCAATAATCAGTCCAAAACAGATCAAGAAACACAGAGGCAAATCCAGAATACATGGTGAGAAGGCAGGCAAAAGTTCAAGGCAACAGTAAGCAGTCCAAAACAGAGCAAGAGGGCAAAGACAGATAGCGAATCATGAAAGTCACTTGAAATAACGCTTGGTAATGCAGGTAAACTAGGAATACTTTGCAAGGAAGCCTGGCCTGAGCTCTTGCTGAAATACAGCACAAACAGAAAGTGACTGCAGAGGGAGCGGAGCTGAGCCTGTAGTCGGGCGAGGGCTTCCTCTGCTGGCGTAGCATTACATATGATAAGCTAGTGTTTCAGGAATGAAATAATCAGTACAATCTACaagaacagtgtttctcaactggtgggtcgtgacccaaaagtggtcgcgggaacattttcagtgggtcgcggagtgtgtagtcaaaaaaacaacaaaaattaaatattttacttattttgcttatatcccacttttattttgaaatgcgtctGCGACAACTGaacttttccttaccctaaccactgtttgcagtatttgatgtttttactctgtaataatttgatgcattttgttaaatgacag

Function

GO:

id name namespace
GO:0042737 drug catabolic process biological_process
GO:0019265 glycine biosynthetic process, by transamination of glyoxylate biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0017144 drug metabolic process biological_process
GO:0007601 visual perception biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0004760 serine-pyruvate transaminase activity molecular_function
GO:0008453 alanine-glyoxylate transaminase activity molecular_function
GO:0008241 peptidyl-dipeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052619 lncRNA upstream 63659 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00052618 lncRNA upstream 70790 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052328 lncRNA upstream 86034 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052617 lncRNA upstream 109364 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00049655 lncRNA upstream 309544 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052621 lncRNA downstream 550370 14028243 ~ 14073770 (+) True XLOC_025145
TCONS_00052329 lncRNA downstream 723170 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00049683 lncRNA downstream 764246 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052330 lncRNA downstream 766325 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00052331 lncRNA downstream 773371 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00049663 mRNA upstream 3675 13469704 ~ 13473197 (+) True XLOC_025133
TCONS_00049662 mRNA upstream 30787 13440900 ~ 13446085 (+) True XLOC_025132
TCONS_00049659 mRNA upstream 129776 13332870 ~ 13347096 (+) True XLOC_025127
TCONS_00049657 mRNA upstream 217974 13190028 ~ 13258898 (+) False XLOC_025126
TCONS_00049658 mRNA upstream 217974 13242690 ~ 13258898 (+) True XLOC_025126
TCONS_00049664 mRNA downstream 4669 13482542 ~ 13489945 (+) True XLOC_025135
TCONS_00049665 mRNA downstream 34111 13511984 ~ 13521115 (+) True XLOC_025136
TCONS_00049666 mRNA downstream 81326 13559199 ~ 13567762 (+) True XLOC_025137
TCONS_00049667 mRNA downstream 91933 13569806 ~ 13576052 (+) True XLOC_025138
TCONS_00049668 mRNA downstream 122841 13600714 ~ 13618382 (+) False XLOC_025139
TCONS_00049661 other upstream 70334 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 70549 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049628 other upstream 1529915 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 3313311 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 4434777 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049675 other downstream 370353 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 766793 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 921352 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049704 other downstream 1196896 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 2213430 15691303 ~ 15719823 (+) True XLOC_025174

Expression Profile

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