RNA id: TCONS_00049668


Basic Information

Item Value
RNA id TCONS_00049668
length 1877
RNA type mRNA
GC content 0.45
exon number 8
gene id XLOC_025139
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13600714 ~ 13618382 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCACATCGACGGCATGTGCACGCGCGCCGCTGTCTAGCAGCAGGTAGAATCTGGAAGCTTCTGGATCCGCAGTGGTGTGTTTATAATAACGGAGCTGAACTGAACTCAAGTGTAACATTATTTACACTGCGGGGAAACTTGACACACGTCCAAGTAACGTCTGCTACTACTGCTAAATCGGACACACAGCATTTAAAAAGATGGCTGAAGGCAGAGGTAACCGGCATCACCCTCGTAATCTGCAAGGTGTTCTTCAGATGGCAGTGGAGGCCGGTTCTGCTTCTGACGGTCCATCTCCGCTAGAACCCATGACACAAGAGAGGATGGATTTTCTGCGAGGAGCTCTTTCTGAAGTGTGTAAAGGACAAATGGATGAGGTCGAGCAGATGAAGCGGTGTTTGGAGGTGCTGAAAACTGATGGATGCAAGGACAGAGAAGTCgaaggagaggaggaggaggagcaggaggacGACGAGCGGGAAGAAGCGCTGGAAATGCTTTCTGAGCTTTGCGAAAACCTGGACAATGCAAGAGATCTGATGAAGCTGGGTGGTCTGGATCTGTGTTTGTCACGGTGTCTCTGTCACACAGAGGCAGGCATTCGCTGGAGAGCAGCTCAGCTTATCGCCAGCTCGGCCCAGAATATGCCGGAGGTGCAGTTCTACCTGCTTAACCAGGGGGCGCTGCTAACCCTCCTGCAGCTCGCAGATAATGACCCACACAGCACAGTCAGGGTTAAAGCACTCTACGCCGTGTCCTGTTTAGTGCGTGAACAGGAAGCTGGACTGAAGGACTTCCTTTCACATGACGGCTTTTCAGTGCTGATGAGGGGGATGCAGTCAGACAGTGAGAAGCTGAGAACTAAATCAGCGTTTCTTCTTCTAAACCTTTTGAACAGTCATCCAGAACACAAAGATACAGTGTTGTCTATGGGAATGGTCCAGCAGCTGGTGTCTGTTCTCCGCTCTCCTCATTCCTCTGTTCACGAACATGTGCTTGGCGCCCTCTGCTGtctAGTGGAGGACTCTCCCCGTGGCATGAGCGACTGCAGAGATCCATCGCTGGGCTTGGAGGAACTGCTCAAACAGAGAGTGCAGGATCTAAGGGGCCAAGAGGAGAGCCTGGAGGAACTGGAGTTTTGTGAACGTTTGCGAGCGGTTTGTTTTCCGGGACAAACGCAAGAGGATAATGCCATGGATCGCTGACCATCTGATTGCTGATTCAACGAATAACAGCAACACCCAGTTTGTATTCCTTCTCTGTTTAAGAGAGAAACCAAAACAATAGGAATAATACTGTTAAAAAGATCAACGTGAAAGAGACTTTTAACTCTGAGTTTTCAGAGATGagtttagctgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgttcaTGTACTGGACACAAACACTCGTGTGTAATGATGATGaacatgtacatttatttataatatctttGTTCGTTATTATAAATGTTCTGTTATATGGTCAACTTTCGAAacattcttaaagggacagtactcTCAAAAATGACAGTCCTGTCATTTGTTCTCACTTAACTCTTgagtttcctctgttgaacataaaaaaagatattttaattcatCCGGTGACTTCCATTGTAATTTGTTGTCCTACTATGTAAGTCAGTGggtaccagcattcttcaaactatcttattttgcattcaagaaagaagaaagaagttcatcaagatttaaaaccacataatagaaagtaaataatgagatatttgacatttttgggtgaactatctcttggTCAATCACACAAATACAAAGCCATAATGTAGAACTGCACATTATTATTATAgacaataatttaaaataaacacattcagaCCTGTGTTTAAACA

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-030219-55 Predicted to enable adenyl-nucleotide exchange factor activity. Predicted to be active in endoplasmic reticulum. Is expressed in optic tectum and solid lens vesicle. Orthologous to human HSPBP1 (HSPA (Hsp70) binding protein 1).

Ensembl:

ensembl_id ENSDART00000162124

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052620 lncRNA upstream 122841 13476872 ~ 13477873 (+) True XLOC_025134
TCONS_00052619 lncRNA upstream 187501 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00052618 lncRNA upstream 194632 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052328 lncRNA upstream 209876 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052617 lncRNA upstream 233206 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052621 lncRNA downstream 409861 14028243 ~ 14073770 (+) True XLOC_025145
TCONS_00052329 lncRNA downstream 582661 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00049683 lncRNA downstream 623737 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052330 lncRNA downstream 625816 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00052331 lncRNA downstream 632862 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00049667 mRNA upstream 24662 13569806 ~ 13576052 (+) True XLOC_025138
TCONS_00049666 mRNA upstream 32952 13559199 ~ 13567762 (+) True XLOC_025137
TCONS_00049665 mRNA upstream 79599 13511984 ~ 13521115 (+) True XLOC_025136
TCONS_00049664 mRNA upstream 110769 13482542 ~ 13489945 (+) True XLOC_025135
TCONS_00049663 mRNA upstream 127517 13469704 ~ 13473197 (+) True XLOC_025133
TCONS_00049670 mRNA downstream 6433 13624815 ~ 13633331 (+) True XLOC_025140
TCONS_00049671 mRNA downstream 19001 13637383 ~ 13684397 (+) True XLOC_025141
TCONS_00049672 mRNA downstream 212217 13830599 ~ 13837063 (+) True XLOC_025142
TCONS_00049673 mRNA downstream 224172 13842554 ~ 13877704 (+) False XLOC_025143
TCONS_00049674 mRNA downstream 224199 13842581 ~ 13855721 (+) False XLOC_025143
TCONS_00049661 other upstream 194176 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 194391 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049628 other upstream 1653757 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 3437153 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 4558619 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049675 other downstream 229844 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 626284 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 780843 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049704 other downstream 1056387 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 2072921 15691303 ~ 15719823 (+) True XLOC_025174

Expression Profile

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