RNA id: TU1932802


Basic Information

Item Value
RNA id TU1932802
length 345
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1689849
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36196107 ~ 36196451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATATATGTTCATGGATTAGCAGCAGCCTACTTAAGTTTTTGTGACTGCCATCACTCACCGGAGGCCACGATGACCGTTAGCTGATCCGCTGTCAGCGCAGGTGGGATAGTTGTAGATGCAGATAAAGACATATTGAACTAAAATCAATCAGCATGTAAACGAGGTTCCGCTGTGTAAACGGACCACATAAAAATGTTGGCTTTCACTGGCATGATATTAGGCTATTCCTGTCCAAACCAAGAAGATCAAAATAAATCGATTATCTTCCTCTTCATTCGAGGGCAGAGCCTGACACTGTTGTTAAATCCAGTTTAACTGCAGGATTCTGCCACCTATTTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932797 lncRNA upstream 7600 36188291 ~ 36188507 (+) True G1689845
TU1932795 lncRNA upstream 10612 36185180 ~ 36185495 (+) True G1689843
TU1932787 lncRNA upstream 35868 36159939 ~ 36160239 (+) True G1689835
TU1932767 lncRNA upstream 80239 36115589 ~ 36115868 (+) True G1689818
TU1932766 lncRNA upstream 80628 36115178 ~ 36115479 (+) True G1689817
TU1933071 lncRNA downstream 51357 36247808 ~ 36248254 (+) True G1690078
TU1933083 lncRNA downstream 53645 36250096 ~ 36250415 (+) True G1690088
TU1933084 lncRNA downstream 58365 36254816 ~ 36255336 (+) True G1690089
TU1933086 lncRNA downstream 65323 36261774 ~ 36263131 (+) True G1690091
TU1933088 lncRNA downstream 68209 36264660 ~ 36264981 (+) True G1690092
XM_021576571.2 mRNA upstream 16506 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 25208 36161203 ~ 36170899 (+) True LOC110499428
XM_036956272.1 mRNA upstream 38325 36125758 ~ 36157782 (+) False LOC110499426
XM_021576572.2 mRNA downstream 10927 36207378 ~ 36247512 (+) True LOC110499432
XR_005038403.1 mRNA downstream 227295 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 240754 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 357428 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 382275 36578726 ~ 36584090 (+) False LOC118942015
TU1932658 other upstream 70717 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 314233 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 493968 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 513670 35681367 ~ 35682437 (+) True G1689347
TU1932017 other upstream 811541 35381709 ~ 35384566 (+) False LOC110499396
TU1933087 other downstream 68209 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 79031 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 108488 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 108488 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 681600 36878051 ~ 36880738 (+) True G1690753

Expression Profile