RNA id: TU1933083


Basic Information

Item Value
RNA id TU1933083
length 320
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1690088
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36250096 ~ 36250415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagggcttactgtaggttacagtagtacagctcggtttgtgttttttactatgtcagggcttactgtaggttacagtagtacAGCTCGGTTTGTGTTTTTCACTATGTCAGggcttactgtaggttacagtagtacAGCTCGGTTTGTGTTTTTCACTATGTCAGggcttactgtaggttacagtagtacAGCTCGGTTTATGTTTTTCACTATGTCAGggcttactgtaggttacagtagtacagctcggtttgtgttttttactatgtcagggcttactgtaggttacagtagtacagctcggtttgtgttttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933071 lncRNA upstream 1842 36247808 ~ 36248254 (+) True G1690078
TU1932802 lncRNA upstream 53645 36196107 ~ 36196451 (+) True G1689849
TU1932797 lncRNA upstream 61589 36188291 ~ 36188507 (+) True G1689845
TU1932795 lncRNA upstream 64601 36185180 ~ 36185495 (+) True G1689843
TU1932787 lncRNA upstream 89857 36159939 ~ 36160239 (+) True G1689835
TU1933084 lncRNA downstream 4401 36254816 ~ 36255336 (+) True G1690089
TU1933086 lncRNA downstream 11359 36261774 ~ 36263131 (+) True G1690091
TU1933088 lncRNA downstream 14245 36264660 ~ 36264981 (+) True G1690092
TU1933089 lncRNA downstream 15469 36265884 ~ 36266118 (+) True G1690093
TU1933090 lncRNA downstream 16149 36266564 ~ 36266865 (+) True G1690094
XM_021576572.2 mRNA upstream 2584 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 70495 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 79197 36161203 ~ 36170899 (+) True LOC110499428
XM_021576566.2 mRNA upstream 92314 36125765 ~ 36157782 (+) False LOC110499426
XR_005038403.1 mRNA downstream 173331 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 186790 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 303464 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 328311 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 445360 36695775 ~ 36809459 (+) False LOC110499541
TU1932658 other upstream 124706 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 368222 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 547957 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 567659 35681367 ~ 35682437 (+) True G1689347
TU1932017 other upstream 865530 35381709 ~ 35384566 (+) False LOC110499396
TU1933087 other downstream 14245 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 25067 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 54524 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 54524 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 627636 36878051 ~ 36880738 (+) True G1690753

Expression Profile