RNA id: TCONS_00050583


Basic Information

Item Value
RNA id TCONS_00050583
length 1510
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_025718
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 50155245 ~ 50269145 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCGCAGTAAAATAGCACCGTATGGAAAATGCGGCTGTGCGAAGGGTTTTTCAGTCATGTCGACACGAGTTTTAACTTTAACGTTACTGAAAAAGCGACACCTGATGCAGTGTTTTTGGAGTACAGTCGGTTCTGTACATCTGAGATCTATCGCTTCTGATAAAATTCCTTCTCATGCAGTTGAAGCGTCTCTTTATGTACACTGGCCCTACTGCCTAAAAAGATGCTCCTACTGCAACTTTAACAAGTATATCCTCCGAAGTGAAAACCACGATACCATGACAGAATGTCTGCAGAAAGAGACAGAGACTTTACTGAAACTCAGTCAGGTGTCCAGGATTACCTCAGTGTTTTTCGGAGGAGGAACACCCAGTCTGGCTCAGTCCTCCACTATTGCTGCAGTGTTAGAGACCGTGACCAAAAACAGCAATCTTTCAGATCTTGCAGAAGTCACTCTAGAAGTCAATCCAACACCTGCTGGAAAAGCTCGTCTGAAAGACTTCACCCTGGCAGGAGTGAACCGCTTCTCTATCGGAGTTCAGtCGTTAAATGCCGATCACCTGAGGATACTAGGTAGGGATCACAGTGTCCAGCATGCCCTTCAGACAGTGTCCGAGGCCCGGAAGCTCTGCCCAGGACGTGTGTCAGTGGACATCATGTTTGCTCTTCCAGGTCAAAGCGTATCATGCTGGCAGAAACAGCTGGAGGAGCTGCTTTATGTTTGTGATGATCACATTTCTTTGTATCAGCTGACTCTGGAACGAGGAACCCAGCTTTTTAAACAGGTTGAGAGTGGTAAACTAAGCGTACCTGGAGATGAAGTCACTGCTGTCATGTACAAAACAGCTTGCAGAGTCCTGGAGGAGAGTGGCTTCCATCAATATGAGGTGTCCAACTTCGCCAGAAATaACGCTGTCAGTGAACACAATATGGGCTACTGGAGAGGACACCAGTACATCGGTGTAGGACCAGGAGCTCATGGTCGTTTTGTGCCGCATGGAGATGGAGGAGTTCAGAGAGAAGCACGAACACAGACATTAGAGCCCGATGTTTGGATAAAAGAGGTTCAGAGTCGCGGTCAAGGAACACGCAGGAGAATAACACTTCACCATCTCCAGCTGCTAGAGGAGGTTTTGGTCATGGGTCTACGTATGAATGAGGGAATCACCCATCAGCACTGGGAGTTATTCAGCCCAGAAGCAAACCTTCAACAAGTTTTTGGGAAATCAGCAAATATTCAGGAATTGCAGGGTGGAAGATTTCTAATACTTGATGATAGGGGTTTGCGGTGCTCCTGGGAAGGATTAGTGCTGCTGGACAGCATCTTACCCACAATACTGCTGGAACTGGAGATGTTTTTCCACAGCAGGGGAATCAAAAGGACACAATAAAGACACTCATTTAGACAGACTGATGACACACACAGCAAATAGCTAatgaggtaaaaacaaaacaaaaaattctcCTATGTAAGGAATTATGTACTTTTGATAAATGACCaaatgttaaa

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0004109 coproporphyrinogen oxidase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2508 Predicted to enable 4 iron, 4 sulfur cluster binding activity. Predicted to be involved in porphyrin-containing compound biosynthetic process. Predicted to be located in mitochondrion. Predicted to be active in cytoplasm. Orthologous to human RSAD1 (radical S-adenosyl methionine domain containing 1).

Ensembl:

ensembl_id ENSDART00000110809

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050579 lncRNA upstream 84967 50069610 ~ 50070290 (+) False XLOC_025717
TCONS_00052790 lncRNA upstream 394561 49753768 ~ 49760696 (+) False XLOC_025716
TCONS_00052791 lncRNA upstream 394561 49753845 ~ 49760696 (+) True XLOC_025716
TCONS_00052789 lncRNA upstream 577990 49565257 ~ 49577267 (+) False XLOC_025715
TCONS_00052788 lncRNA upstream 649085 49490554 ~ 49506172 (+) True XLOC_025713
TCONS_00052792 lncRNA downstream 113889 50286780 ~ 50288488 (+) False XLOC_025719
TCONS_00052793 lncRNA downstream 113942 50286833 ~ 50288488 (+) True XLOC_025719
TCONS_00050589 lncRNA downstream 364236 50537127 ~ 50552748 (+) True XLOC_025721
TCONS_00052794 lncRNA downstream 622430 50795321 ~ 50796217 (+) True XLOC_025723
TCONS_00052795 lncRNA downstream 635746 50808637 ~ 50809193 (+) True XLOC_025724
TCONS_00050580 mRNA upstream 80069 50069610 ~ 50075188 (+) True XLOC_025717
TCONS_00050577 mRNA upstream 80228 50069204 ~ 50075029 (+) False XLOC_025717
TCONS_00050576 mRNA upstream 530579 49576662 ~ 49624678 (+) True XLOC_025715
TCONS_00050575 mRNA upstream 607028 49521106 ~ 49548229 (+) True XLOC_025714
TCONS_00050574 mRNA upstream 733983 49397115 ~ 49421274 (+) True XLOC_025711
TCONS_00050586 mRNA downstream 28349 50201240 ~ 50269145 (+) True XLOC_025718
TCONS_00050587 mRNA downstream 137793 50310684 ~ 50420221 (+) False XLOC_025720
TCONS_00050588 mRNA downstream 139531 50312422 ~ 50419437 (+) True XLOC_025720
TCONS_00050590 mRNA downstream 429975 50602866 ~ 50781505 (+) False XLOC_025722
TCONS_00050591 mRNA downstream 429989 50602880 ~ 50611009 (+) True XLOC_025722
TCONS_00050578 other upstream 80067 50069595 ~ 50075190 (+) False XLOC_025717
TCONS_00050573 other upstream 1022780 49132341 ~ 49132477 (+) True XLOC_025709
TCONS_00050561 other upstream 2694654 47460488 ~ 47460603 (+) True XLOC_025690
TCONS_00050528 other upstream 4520071 45635077 ~ 45635186 (+) True XLOC_025668
TCONS_00050515 other upstream 5267104 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050613 other downstream 2447167 52620058 ~ 52620175 (+) True XLOC_025746
TCONS_00050620 other downstream 2656021 52828912 ~ 52829006 (+) True XLOC_025751
TCONS_00050635 other downstream 3894632 54067523 ~ 54067639 (+) True XLOC_025764
TCONS_00050662 other downstream 5126152 55299043 ~ 55299158 (+) True XLOC_025787
TCONS_00050664 other downstream 5310622 55483513 ~ 55483647 (+) True XLOC_025789

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000334_00175316_00178925.mRNA True 2569 mRNA 0.36 9 CI01000334 175294 ~ 180089 (-)