RNA id: TCONS_00052830


Basic Information

Item Value
RNA id TCONS_00052830
length 1204
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id XLOC_025847
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 58712700 ~ 58715206 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTACACTTGTACAAGAACACTTGACAATATAAATATGACAAACCAAATATGTGAACGCCATCTCTAACACTGATGACACAACTGAACACTGTTTGACTGGCGCTGAGGGAGAATCTCATCATCTCTGACCCGCATCAGGTCATATCAACAGAAAATCAATATGAAAACAGCACAAGGGTactttaataacattaacatgaagcatttaaaacagaggatgattaaatatttaaacacagACCACAGTCAGATATTTACAGCAGCGTCTGGATGCTCTGAACAGAGAACGGAGATGTGTATTATTATCCTCCAGTATATGAGCTGTAAAGAAACTGAAATAACCCTGTCTGGACCACAGCTATCTCACAGAGAACCAGAACATGACAGACGCAAAATAAAAGACTGGATTAAAACAGCTGGTAGACTGGAACATGCAGGACAGAGAGAACAGCGCGAGACAAACACTACAATAAATGACTCTACAGCAACATGATTCAGTTCATGTGAGAAAGATTCAGTTCATTCGTTAGCAGCCAGAAACACACAGTAAACCAGCAGAAGAGAAAGAAGAACAACAGAATCATTAATGAGTGAATCTGAACTGCCTTTCCTTTGGGTTCTGCAGAAAACTGAACTCCAGCTCCTGAGATGAGCTTGAATGAATCAGGGAGGAACAGTCAGCCAGTGATTCAGTGGATCATCCAGGTACATTAATGGATCGTCCTGGTGAATCAGTGAATTGTCCAGGGGAATCAGAGTATGTTCCAGGTGAATCATTGTATCACAGAATGGCCCAGATGAATCATCCAGATGAACCATTGAATTGTCCAGGTGAATCAGTGAATTGTCCGAGGGAATCATTAATTAAGTGCATTATCCAGGTGAATCAGTGGATGgtccaaataaattaataaatcaaccaGGTTAATTAGTGAACAATCCaggtgaatcagtgaatcatccAGGTGAATCAGTGATTCCGTGAACTGTCCAGATGAATCAACAAATTGTCCACATTAATCAAACAGGTGATCAGTGAATTATCTAGGTGAATCATTAAATCAGTGAGTTGGCAGGTGAATCAGTGGATGTTCCAGATGAATCAACCAGGCTAATTAGTGAACAATACAGGTAAATCAGTGAATCATCCAGGTGAATCAGTGAATGGTCCAGTTGAATCAGTGATAATCCTGGTGAATGGTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052829 lncRNA upstream 330 58711054 ~ 58712370 (+) True XLOC_025846
TCONS_00050716 lncRNA upstream 17663 58694176 ~ 58695037 (+) True XLOC_025844
TCONS_00052828 lncRNA upstream 29814 58682557 ~ 58682886 (+) True XLOC_025843
TCONS_00052390 lncRNA upstream 32631 58675988 ~ 58680069 (+) True XLOC_025837
TCONS_00050715 lncRNA upstream 32813 58675988 ~ 58679887 (+) False XLOC_025837
TCONS_00052833 lncRNA downstream 91009 58806215 ~ 58811833 (+) True XLOC_025848
TCONS_00052834 lncRNA downstream 120255 58835461 ~ 58857483 (+) True XLOC_025850
TCONS_00050720 lncRNA downstream 246698 58961904 ~ 58967097 (+) False XLOC_025851
TCONS_00050719 lncRNA downstream 246698 58961904 ~ 58967097 (+) True XLOC_025851
TCONS_00052391 lncRNA downstream 309728 59024934 ~ 59027837 (+) True XLOC_025853
TCONS_00050712 mRNA upstream 47376 58663942 ~ 58665324 (+) True XLOC_025840
TCONS_00050710 mRNA upstream 53357 58655375 ~ 58659343 (+) True XLOC_025838
TCONS_00050711 mRNA upstream 55706 58656312 ~ 58656994 (+) True XLOC_025839
TCONS_00050708 mRNA upstream 224852 58472305 ~ 58487848 (+) True XLOC_025833
TCONS_00050706 mRNA upstream 243865 58455428 ~ 58468835 (+) True XLOC_025831
TCONS_00050718 mRNA downstream 118100 58833306 ~ 58835177 (+) True XLOC_025849
TCONS_00050721 mRNA downstream 269257 58984463 ~ 58989816 (+) True XLOC_025852
TCONS_00050722 mRNA downstream 336297 59051503 ~ 59052994 (+) True XLOC_025854
TCONS_00050723 mRNA downstream 401930 59117136 ~ 59167824 (+) True XLOC_025855
TCONS_00050724 mRNA downstream 696750 59411956 ~ 60282238 (+) False XLOC_025857
TCONS_00050717 other upstream 1945 58702320 ~ 58710755 (+) True XLOC_025845
TCONS_00050699 other upstream 542286 58168523 ~ 58170414 (+) False XLOC_025821
TCONS_00050692 other upstream 714141 57997990 ~ 57998559 (+) False XLOC_025817
TCONS_00050688 other upstream 882781 57825939 ~ 57829919 (+) True XLOC_025812
TCONS_00050682 other upstream 1073252 57636374 ~ 57639448 (+) False XLOC_025808

Expression Profile

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