RNA id: TU1992777


Basic Information

Item Value
RNA id TU1992777
length 317
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1740095
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42811884 ~ 42812200 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCATTATTTTGTCGACAACACATTTTGGTTATGTAATTCATTTTAACAAATTCCAAATGCAAGTTTCATAAGTCGGTCTAAATGTTTCAAGCAATTTTGACTTACCAAAAGACCAGCAGTCCTATGCTAGTATTGTTGCTTTATTCCCCGTTGCTGGTGAGCTTGCAAAGTAAAATGTTCATATTCTTGATCAACATATTCTAAAAAACAATTGGAGCTGCAAATTAATTTGTCAATCCTCTCTCCCTACAATTTTCAGTTTGCGCTGAACCCGATCCAAAAGCTGTACAGCAAATCAACTGTTTAAGAATAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992726 lncRNA upstream 61406 42750217 ~ 42750478 (+) True G1740051
TU1992725 lncRNA upstream 62806 42748824 ~ 42749078 (+) True G1740050
TU1992549 lncRNA upstream 81652 42730010 ~ 42730232 (+) True G1739909
TU1992507 lncRNA upstream 117099 42692495 ~ 42694785 (+) True G1739867
TU1992508 lncRNA upstream 119830 42689628 ~ 42692054 (+) True LOC110500846
TU1992779 lncRNA downstream 2581 42814781 ~ 42815092 (+) True G1740097
TU1992780 lncRNA downstream 4683 42816883 ~ 42817139 (+) True G1740098
TU1992781 lncRNA downstream 4964 42817164 ~ 42817363 (+) True G1740099
TU1992782 lncRNA downstream 5237 42817437 ~ 42817844 (+) True G1740100
TU1992786 lncRNA downstream 6886 42819086 ~ 42821075 (+) True G1740101
XM_021577865.2 mRNA upstream 11336 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA upstream 11336 42790651 ~ 42800548 (+) True LOC110500477
XM_036957893.1 mRNA upstream 121605 42676945 ~ 42690279 (+) False LOC110500846
XM_021577861.2 mRNA upstream 150789 42655361 ~ 42661095 (+) False c21h4orf48
XM_036957894.1 mRNA upstream 150789 42655417 ~ 42661095 (+) False c21h4orf48
XM_021577868.2 mRNA downstream 9515 42821715 ~ 42834094 (+) True LOC110500479
XM_036957895.1 mRNA downstream 190486 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA downstream 190486 43002686 ~ 43034963 (+) False LOC110500480
XM_036957897.1 mRNA downstream 190486 43002686 ~ 43034963 (+) True LOC110500480
XM_021577872.2 mRNA downstream 229566 43041766 ~ 43055080 (+) True gmpr2
TU1992021 other upstream 309527 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 456557 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 523384 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 914028 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 920517 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 443453 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 455014 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 455131 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 576989 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 634850 43447050 ~ 43451167 (+) False G1740398

Expression Profile