RNA id: TU1992780


Basic Information

Item Value
RNA id TU1992780
length 257
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1740098
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42816883 ~ 42817139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgaaataatatcctattggtgagccaactggtaaatgcagagggtcttttactcagttataaagaattcttatcactttacaaggtccctgtaacacctaaagattttgcaattgttttagatgccattccctcaggtgttgctatgttattcaggaacgtgtcaagacctgaccctcagagcctaccttctgttgaccctgttgactcatcagtaggaaagatttgtttctcttttggtccattcaacaacagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992779 lncRNA upstream 1791 42814781 ~ 42815092 (+) True G1740097
TU1992777 lncRNA upstream 4683 42811884 ~ 42812200 (+) True G1740095
TU1992726 lncRNA upstream 66405 42750217 ~ 42750478 (+) True G1740051
TU1992725 lncRNA upstream 67805 42748824 ~ 42749078 (+) True G1740050
TU1992549 lncRNA upstream 86651 42730010 ~ 42730232 (+) True G1739909
TU1992781 lncRNA downstream 25 42817164 ~ 42817363 (+) True G1740099
TU1992782 lncRNA downstream 298 42817437 ~ 42817844 (+) True G1740100
TU1992786 lncRNA downstream 1947 42819086 ~ 42821075 (+) True G1740101
TU1992789 lncRNA downstream 19005 42836144 ~ 42838760 (+) True G1740103
TU1992813 lncRNA downstream 42707 42859846 ~ 42860278 (+) True G1740127
XM_021577865.2 mRNA upstream 16335 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA upstream 16335 42790651 ~ 42800548 (+) True LOC110500477
XM_036957893.1 mRNA upstream 126604 42676945 ~ 42690279 (+) False LOC110500846
XM_021577861.2 mRNA upstream 155788 42655361 ~ 42661095 (+) False c21h4orf48
XM_021577868.2 mRNA downstream 4576 42821715 ~ 42834094 (+) True LOC110500479
XM_036957895.1 mRNA downstream 185547 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA downstream 185547 43002686 ~ 43034963 (+) False LOC110500480
XM_036957897.1 mRNA downstream 185547 43002686 ~ 43034963 (+) True LOC110500480
XM_021577872.2 mRNA downstream 224627 43041766 ~ 43055080 (+) True gmpr2
TU1992021 other upstream 314526 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 461556 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 528383 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 919027 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 925516 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 438514 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 450075 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 450192 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 572050 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 629911 43447050 ~ 43451167 (+) False G1740398

Expression Profile