RNA id: TU1992726


Basic Information

Item Value
RNA id TU1992726
length 262
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1740051
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 42750217 ~ 42750478 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtcagttgagactaaaattgagctttttggccatcaagggaaacgctatgtctggtgcacacccaacacctttcatcatcccgagaacatcatccccatagtgaagcatggtggtggcagcatctgggaaactggtcagaattgaaggaatgatggatggcgttaaatacagggaaattcttgagggaaacctgtttcagtcttccagagatttgagactgggacggaggttcaccttccagcaggacaatgaccctaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1992725 lncRNA upstream 1139 42748824 ~ 42749078 (+) True G1740050
TU1992549 lncRNA upstream 19985 42730010 ~ 42730232 (+) True G1739909
TU1992507 lncRNA upstream 55432 42692495 ~ 42694785 (+) True G1739867
TU1992508 lncRNA upstream 58163 42689628 ~ 42692054 (+) True LOC110500846
TU1992503 lncRNA upstream 89053 42655390 ~ 42661164 (+) False c21h4orf48
TU1992777 lncRNA downstream 61406 42811884 ~ 42812200 (+) True G1740095
TU1992779 lncRNA downstream 64303 42814781 ~ 42815092 (+) True G1740097
TU1992780 lncRNA downstream 66405 42816883 ~ 42817139 (+) True G1740098
TU1992781 lncRNA downstream 66686 42817164 ~ 42817363 (+) True G1740099
TU1992782 lncRNA downstream 66959 42817437 ~ 42817844 (+) True G1740100
XM_036957893.1 mRNA upstream 59938 42676945 ~ 42690279 (+) False LOC110500846
XM_021577861.2 mRNA upstream 89122 42655361 ~ 42661095 (+) False c21h4orf48
XM_036957894.1 mRNA upstream 89122 42655417 ~ 42661095 (+) False c21h4orf48
XM_021577860.2 mRNA upstream 108936 42633393 ~ 42641281 (+) True faah2b
XM_021577852.2 mRNA upstream 164004 42569233 ~ 42586213 (+) True LOC110500468
XM_021577865.2 mRNA downstream 40126 42790604 ~ 42800548 (+) False LOC110500477
XM_036957892.1 mRNA downstream 40173 42790651 ~ 42800548 (+) True LOC110500477
XM_021577868.2 mRNA downstream 71237 42821715 ~ 42834094 (+) True LOC110500479
XM_036957895.1 mRNA downstream 252208 43002686 ~ 43034963 (+) False LOC110500480
XM_036957896.1 mRNA downstream 252208 43002686 ~ 43034963 (+) False LOC110500480
TU1992021 other upstream 247860 42501349 ~ 42502357 (+) True G1739440
TU1991912 other upstream 394890 42354577 ~ 42355327 (+) True si:dkey-185m8.2
TU1991899 other upstream 461717 42285056 ~ 42288500 (+) True cxcl8c
TU1991652 other upstream 852361 41895329 ~ 41897856 (+) True G1739103
TU1991654 other upstream 858850 41888811 ~ 41891367 (+) False G1739103
TU1993038 other downstream 505175 43255653 ~ 43327738 (+) True G1740312
TU1993035 other downstream 516736 43267214 ~ 43268143 (+) False LOC110500499
TU1993034 other downstream 516853 43267331 ~ 43268143 (+) True LOC110500499
TU1993101 other downstream 638711 43389189 ~ 43390299 (+) True G1740366
TU1993150 other downstream 696572 43447050 ~ 43451167 (+) False G1740398

Expression Profile