RNA id: XM_021579933.2



Basic Information


Item Value
RNA id XM_021579933.2
length 1181
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC110502026
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24125893 ~ 24137925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaaataaggtGAGACTAAGTCAATAGATACGTATTAAATCGTTTATCAATACAAATGTAATACAATAAAGTACAATTATATTAAAACCTAAATTATCGTACGTCTCGGTTTTCTTTAGAAGACTACGGAAACGAAGACGTCCCCTATTAGCTGAAGTGGTATCGCCTAATATTCCACTTACCAGCGGCTAGGGTAGGACTCGGAGGATATCGTTTCACCGAGGCGCCAGCGGAAAAAAAGAGAGCTGAATGTTGTTGTAAACCCGACATTAACTAGCTATATTATAAACACTTTTGTTGTAAATAAAGCAGTATATTTGTGTTACCGTTATATATTTAGTTTACGATGTCTACTCCGGCAAGAAGACGATTGATGAGAGATTTTAAACGGTTACAAGAAGACCCTCCGGCTGGCGTCAGTGGTGCCCCTTCCGAAAACAACATAATGGTGTGGAATGCAGTCATATTTGGCCCAGAAGGGACACCTTTTGAGGACGGCACATTTAAGCTTACTGTTGAGTTCACAGAAGAATACCCTAACAAACCCCCCACAGTACGATTTGTGTCAAAGATGTTTCATCCAAATGTGTATGCAGATGGCAGTATATGTCTAGACATTCTGCAGAATCGATGGAGTCCAACCTATGATGTGTCATCCATTCTTACCTCTATTCAGTCTCTGCTAGACGAACCAAACCCCAACAGCCCAGCCAACAGTCAGGCGGCCCAGCTTTACCAAGAAAACAAGAGGGAGTACGAGAAGCGTGTGTCGGCCATTGTAGAACAGAGCTGGAGGGACAGTTGACCACATCCTCTCCCTTCTGGCCCTCTCTATCCCCAGCGCTGAGCTGTGTGTGATGCGAGTTTGAGTAGTACATcttaatttagattttttttgtttcttcCTCCATTTTAATTTGACATTTATGCACTTTACCTGTCCCTTGTTGAACATTTTTTTCCCTAACACGCTTGGAGTGgcgtttttgttattttttctgtctctctcctgttttggCTTATCAGGGGACTTATGTGCTGAATCTTGTTTTTGTCGCCACCGTCTTCAATTGAGGACAATTTTTGGACGTCAATTACATGCCGCCTCCCTTCCCACACTGAAATAAATTAGTTGGACTGATGTGTAATGTTTGGAAGAAATATCAATTAATCATGTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2049792 lncRNA upstream 5723 24122814 ~ 24123198 (+) True G1790825
TU2049781 lncRNA upstream 51153 24077538 ~ 24077768 (+) True G1790814
TU2049750 lncRNA upstream 77758 24050880 ~ 24051163 (+) True G1790785
TU2049679 lncRNA upstream 105545 24022386 ~ 24023376 (+) True LOC110502003
TU2049665 lncRNA upstream 181194 23930575 ~ 23947727 (+) True G1790709
TU2049768 lncRNA downstream 2847 24140772 ~ 24141197 (+) True G1790801
TU2049770 lncRNA downstream 186968 24324893 ~ 24325151 (+) True G1790803
TU2050448 lncRNA downstream 195950 24333875 ~ 24334595 (+) True G1791414
TU2050458 lncRNA downstream 201274 24339199 ~ 24339878 (+) True G1791424
TU2050484 lncRNA downstream 219662 24357587 ~ 24357951 (+) True G1791450
XM_021579919.2 mRNA upstream 10675 24084901 ~ 24118246 (+) False LOC110502017
XM_021579920.2 mRNA upstream 10675 24085617 ~ 24118246 (+) True LOC110502017
XM_021579889.2 mRNA upstream 106384 23956163 ~ 24022537 (+) False LOC110502003
XM_021579928.2 mRNA downstream 10119 24148044 ~ 24157384 (+) True rab20
XM_021579873.2 mRNA downstream 126406 24264331 ~ 24324757 (+) True LOC110501999
XM_036958965.1 mRNA downstream 269025 24406950 ~ 24423067 (+) False LOC110501605
XM_021579289.2 mRNA downstream 269026 24406951 ~ 24423067 (+) False LOC110501605
XM_021579293.2 mRNA downstream 710589 24848514 ~ 25008393 (+) False LOC110501609
TU2049772 other upstream 9446 24118562 ~ 24119475 (+) True G1790805
TU2049337 other upstream 696538 23416093 ~ 23432383 (+) True G1790442
TU2047594 other upstream 2129298 21998473 ~ 21999623 (+) True G1788815
TU2047590 other upstream 2132828 21995364 ~ 21996093 (+) True G1788811
TU2046423 other upstream 2992444 21134265 ~ 21136477 (+) True G1787719
TU2050548 other downstream 256143 24394068 ~ 24410713 (+) True LOC110501605
TU2051105 other downstream 705017 24842942 ~ 24843285 (+) True G1792040
TU2051120 other downstream 711041 24848966 ~ 24849344 (+) False LOC110501609
TU2051116 other downstream 869250 25007175 ~ 25013655 (+) True LOC110501609
TU2051751 other downstream 1156621 25294546 ~ 25296557 (+) True G1792649

Expression Profile