RNA id: TU2051120


Basic Information

Item Value
RNA id TU2051120
length 379
RNA type TUCP
GC content 0.58
exon number 1
gene id LOC110501609
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24848514 ~ 25013655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTCCATCTCCCAAAGTCAATGAGTATAGTGGCAGAGGAGCCCCCGCGGTGGAGTCGGCCAGAGCTGCGCTTTTCCTAAAATATGACCAGGGGTGCTTGGATGTGTCGGAAGCAAGATGACGGCTTAAAAATCTGGTTTGCACCCCGAGAGAACGAGAAGCCATTTACCGAGTCGGAGCGGGCCCAGAGATGGCGCCTATCGCTGGCCTCTCTTCTCTTCATCACCGTCCTGCTCTCTGATCACTTGTGGTTCTGCGCCGAGGCCAAACTGACGCGGACCCGAGACAAGCGGCAGGACAAGCGGCTCGCCTTTACGGACATGGTCGAGTACCCAAACTCCACTCACCACCACACCCCCTCCTCTGACCCCCATTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2051086 lncRNA upstream 19609 24828958 ~ 24829357 (+) True G1792021
TU2051079 lncRNA upstream 22324 24826365 ~ 24826642 (+) True G1792014
TU2050741 lncRNA upstream 71505 24710961 ~ 24777461 (+) True G1791694
TU2050745 lncRNA upstream 130483 24713604 ~ 24718483 (+) True G1791697
TU2050645 lncRNA upstream 281828 24566902 ~ 24567138 (+) True G1791603
TU2051123 lncRNA downstream 779 24850123 ~ 24850407 (+) True G1792052
TU2051127 lncRNA downstream 5758 24855102 ~ 24855313 (+) True G1792056
TU2051128 lncRNA downstream 6313 24855657 ~ 24855857 (+) True G1792057
TU2051133 lncRNA downstream 9797 24859141 ~ 24859354 (+) True G1792062
TU2051136 lncRNA downstream 12188 24861532 ~ 24861741 (+) True G1792065
XM_036958965.1 mRNA upstream 425899 24406950 ~ 24423067 (+) False LOC110501605
XM_021579289.2 mRNA upstream 425899 24406951 ~ 24423067 (+) False LOC110501605
XM_021579873.2 mRNA upstream 524209 24264331 ~ 24324757 (+) True LOC110501999
XM_021579928.2 mRNA upstream 691582 24148044 ~ 24157384 (+) True rab20
XM_021579932.2 mRNA upstream 711041 24129070 ~ 24137925 (+) True LOC110502026
XM_021579295.2 mRNA downstream 305753 25155097 ~ 25162839 (+) False LOC110501611
XM_021579296.2 mRNA downstream 307030 25156374 ~ 25162839 (+) True LOC110501611
XM_021579302.2 mRNA downstream 344091 25193435 ~ 25223476 (+) False LOC110501614
XM_036958973.1 mRNA downstream 344092 25193436 ~ 25223476 (+) False LOC110501614
XM_021579300.2 mRNA downstream 344360 25193704 ~ 25223476 (+) False LOC110501614
TU2051105 other upstream 5681 24842942 ~ 24843285 (+) True G1792040
TU2050548 other upstream 438253 24394068 ~ 24410713 (+) True LOC110501605
TU2049772 other upstream 729491 24118562 ~ 24119475 (+) True G1790805
TU2049337 other upstream 1416583 23416093 ~ 23432383 (+) True G1790442
TU2047594 other upstream 2849343 21998473 ~ 21999623 (+) True G1788815
TU2051116 other downstream 157831 25007175 ~ 25013655 (+) True LOC110501609
TU2051751 other downstream 445202 25294546 ~ 25296557 (+) True G1792649
TU2052189 other downstream 881982 25731326 ~ 25731754 (+) True G1793045
TU2052918 other downstream 1466482 26315826 ~ 26316243 (+) True G1793717
TU2054765 other downstream 3054238 27903582 ~ 27912875 (+) True G1795411

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_00514310_00583480.mRNA True 1143 mRNA 0.51 3 CI01000049 514310 ~ 583480 (+)