RNA id: XR_005038972.1


Basic Information

Item Value
RNA id XR_005038972.1
length 553
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC118943646
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29621005 ~ 29622074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAATATTCCAGTATTTCTGGTTCCGGTGATGGGGAAGGGATAGATGTACGTATGCGCACATGGACAAACGTTTTGTTATTTTTGGGTGTACAAGAATAGTGTGTGCATGCGTTAATGAGTTTCAGTACCACACCTCTGGGCTGGTAAACCCCCTTGGCATTTAAGATTATGAGGCTTATTAAATGTCTAAGTAGGGGGAGGCAtttacattaccctctctctcctccttctcaccCAGTTCAGATGGGTTCATCATGATACCACCCATTGAATCGCGACGGAGTAGACTACACATGATGgttcagaaagaagaggaggacatACAGAGAAGCTAGGTGGTGCTGTGAGGCCAGGGAGAGGCACCTGTTGGAGTTAAGCCAACCTAAACTGCAGAAACTGGTATTCCATCGTCACATTTTAAACTGAGAAAAGAGGAGATGGACTGGCAACGGAGACAGGCAGGGGAAAAGGAGTATGAGAGGATGAAGGCTAAACAGCAGGAGAACGCCAGAGAGTGTTAGCAATGTACAAATAAATCACTTATTTACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057062 lncRNA upstream 123 29620635 ~ 29620989 (+) True G1797499
TU2057044 lncRNA upstream 19116 29601734 ~ 29601996 (+) True G1797481
TU2057029 lncRNA upstream 28507 29592343 ~ 29592605 (+) True G1797466
TU2057028 lncRNA upstream 28982 29591906 ~ 29592130 (+) True G1797465
TU2056904 lncRNA upstream 126176 29494654 ~ 29494936 (+) True G1797349
TU2057094 lncRNA downstream 17910 29639984 ~ 29640263 (+) True G1797528
TU2057096 lncRNA downstream 18953 29641027 ~ 29641228 (+) True G1797530
TU2057097 lncRNA downstream 19241 29641315 ~ 29641538 (+) True G1797531
TU2057125 lncRNA downstream 42846 29664920 ~ 29665320 (+) True G1797559
TU2057143 lncRNA downstream 56058 29678132 ~ 29678419 (+) True G1797575
XM_036959066.1 mRNA upstream 32029 29500150 ~ 29589083 (+) False LOC110501709
XM_036959067.1 mRNA upstream 32029 29500150 ~ 29589083 (+) False LOC110501709
XM_036959068.1 mRNA upstream 32029 29500150 ~ 29589083 (+) False LOC110501709
XM_036959069.1 mRNA upstream 32029 29501834 ~ 29589083 (+) True LOC110501709
XM_021579446.2 mRNA upstream 193706 29340787 ~ 29427406 (+) False tsc22d1
XM_021579458.2 mRNA downstream 236681 29858755 ~ 29872101 (+) True LOC110501715
XR_005038816.1 mRNA downstream 272052 29894126 ~ 29903673 (+) True LOC118943587
XM_021579460.2 mRNA downstream 290207 29912281 ~ 29915808 (+) True LOC110501716
XR_005038966.1 mRNA downstream 295699 29917773 ~ 29933035 (+) False LOC118943632
XR_005038967.1 mRNA downstream 295710 29917784 ~ 29933035 (+) False LOC118943632
TU2055989 other upstream 610839 29008624 ~ 29010273 (+) False LOC110501700
TU2055990 other upstream 610839 29008624 ~ 29010273 (+) False LOC110501700
TU2055991 other upstream 610839 29008624 ~ 29010273 (+) True LOC110501700
TU2056148 other upstream 636886 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 1528996 28091565 ~ 28092116 (+) True G1795550
TU2057150 other downstream 122118 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 301483 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 878582 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1266587 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1266587 30888661 ~ 30891067 (+) False G1798397

Expression Profile