RNA id: XM_021579653.2


Basic Information

Item Value
RNA id XM_021579653.2
length 9259
RNA type mRNA
GC content 0.55
exon number 34
gene id LOC110501816
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37358144 ~ 37390316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGGTCAAAGTTTATTTGCACAGCGTGCTAGTTTCGCGCCAGCATTTTCGCGGGGAGTGACAACTACACTGATAATCGGCGAGAAATGAAACACCCCAAATAAGATAATATCGGTTATACTTGCAGTATATTTGTGGCGTTCATGGTATACTTTTATTTGATCGTTTGTATTCTATCAGGAGTACTAAGCCCTAGGTGTGAGAGGAACCAGGATGATGGCGACGGTGCCCCTGACCAGCTCcagtctcctccctctgctggaaTCTCTGGAGGATATCACAGCCGGACAGCCGGAGCAGACAGACGCCTACCTCACCATTGTCAATCGTCTCAGTGGGGATGATGGAACACAGTTTCTCCCTGCCATTGTAAAGAACATTTCACGTTTGGGTAGAACTTTCCAGACCCATATCGCCAGTCAGAATGCAGAGCTGAGCCAGGCTGCACTACAGGCCCTGGGGTTCTGTGTGTTCCATGCCCATGTCGTCTCAGCTATCCCAGCTAATTTTGCAGAGGAGCTACTGTCAGCTCTTTCCTCTCTGGTGGTGAAGTCTACAGACAAGAACACATGCACCAGAGCGTTATGGGTCATCTCCAAACAGAACTTCCCTCCAGAGGTGGTGGCCAAGATGGTGCCAGAGATTCTGAGAACCCTGGAGTGTGTACGGACTAGAGAAGACATccagtctgttgtcatggagcATGAGTCGTTGAATGTTATCATAAGgctGCTGGACCAGACCCCAGCCCAGATGGGTGAGTGTGCAGTGCAGTGGGCCAAGCTAGTCATCCCTCTGGTGGTCCACTCAGCCTCTAAAGTGCGCCTGCGGGCGGCAGCAGCCCTGGAGATGGGTCTGCCTCTACTAATGGAGAAACAGAAAGAGGTGGCAGCCATCATAGAACCCATCATGTCCTCTAAACTCATCCCAGAGCTCCAGAAACTGTTCTCTACGAAGAACGAGACCAATGTTCTGAAACTCTGGCCGTTGTTTGTCAGGCTCCTAGGGAAGCTGCTCCATAGAGGTGGTCCCTTCATCAACTCCCTGCTTGGCCTGGAGGAACTGGGCTTCCGTAGCTCCTCCCCTAACATCAAGAAGATCGCCTTCATTGCCTGGAAGAGCCTCATagacaacttctccctcaatccAGAGATCCTGTGCAGTGCCAAGCGGCTGAAGTTGCTGCTGCAGCCCCTCCGCTCCATCCAGGTGAGGACTGAGGCCCTGCTGCTCACCAAGCTGGAGGTCTGGTGGTACTTGGTGGTCAAACTGGGACCCAACCTGCCTGCACACTTTGAACAGGTTGGTGTTCCTCTCCTCCAGTGTACACTGGGCACTGACTCTGCCTTCCCAACTACTCCAGCCCGGAGCTCCATTCAGAACAGTGCTGTGGGGACCAGTACACACAAAACTGGTGCCCCGGCCTTCTCCAGCCCTACGGTGATGCCCCGTCTGAACCTGAACTGCAGTGTGGTGGCGAGCCAGGCCTACCCCTCTATACAGCTGCTGGGATTAGAGATGCTGCTGCACTACTTCATGGGGTCAGAGGTCACCGCCGCCGCTGCCAAGAACCAACTGACGCTCAGCCTGGAACCTCTGGTTCACCCCTTCCTGTCTAGCCCCACCTCCTTCACCAAGCACGGCTCTTTGCTTATCTCCGCAGTCCGCGACAGCTTCATCTGCATCGGCAAAGACGCCCCAGATGCCTTGCTTGCCCTTATATGGAGGAACCTTGTCAGTTTCGTAATCACAACGATTGATGCTGCTGGCCATAAGAAAGAGCGCCAGGGCTCTGAGCTCCTCCCCCTGTTGCTACAGGCTCTACAGAGCATCATCTCCTCAGAGGCCCTCCCTGCACACAGGGCTCTGAGTCTGCTGGAAATGACAGTGAAGGGTATCCCTCAAAGGATACTGGGATCTGCCTCTTACCAAGTGGGCAAAATGGATCTTTTGAACGGAACCCCGGCTCTGTTCCTGATTCTCCTGTTCTACAACAGCAGTCTGGTGGGAGGGTTCGTAGAAGATGAGAGGTTTTTCCTGTGTTTAGAGACCCTAGTGAGCTGTGGTCTCTCCGGCCTCACGTCCCCTCTGGCATTTGGGGAGGCGGTCCTGGGGGCGGTGGGGCGCAGCGCGGGGACTCTGGGGAATAAGGAACAGCTGTGGAGGATGTGGAGTGTGGTGGTCAACCCACTGACTGTTACCATCACACAGACCAATGAGGTGAACCAAGGGGATGCTCTGGAGCACAACTTCAGTGCTGTTCACACTGCCCTGATGTTCCCCATCACACACCTGCTACCTGGCAACGCCCTGCCACATGTGACCCAGAAGTCCATGCTGGGTACGTGGTCCAGGCTGTATAAGGTGTTTGCCTGTTGCTCTGCCCTGGTGGCCACTGCCGAGGAGAATGTCTGCTGTGAGGAGctgtgtggcaaaatggctgccCTATTGGACAGGAAGGCCCTGAGGGTTCCGTCAACGTTGGATGCGGTTGCTAACATCCTCCTGGTCATCGTTGAGAGTTCTGACTTCTCTCCCTACACTTCACAGTTTCAACAGAAGATGAAATCTCCCCACACCCCTCTGGCCTGGGTGCGTAAGAAAAGCAAAGCCCTTGGGAACCTGTCTAGCTTCCAGACCCTGCTGGTCCAGGCCCTGGAGGCCTTTAATGCTGTTGAGGCTCCTGAGACTGTCCCTGAGGGTACAGGCCTGGCCCTGGTCGCCATCCTCTCTACCCTGTTCTCTAATCTGGCACTGGCTACAGCCATCCAGGAGGCCCTGGCCTCTCTCACACAGCCCCTCACAGCCCTCTATGAACAGCCTGGGAGGACTCCAAATGAGCAGCCGAAATCCACCTCAAGTCTTGGAGCAAAGCTGGAGAAGCTCCTGGTTGATGTGTTGGGCTGCCTGCAGACGTGTTCCGCCCTGGCCTATGATGATgagctgctgtccctgctgtccccCCTGCTCTGTGTCCTGTTCCTCCACCGGCGGAAGCACATCCGCTCCCTCGTCACACAGTTCTGGAACGCAACCTTCGCTAACACTTTGGTCCTCGTCTACCCAGAACAACTCAAGCCAGTGTTGAGCCAGGTGAAGCAGAACACTCCTATCCTCTTACCTGGCTTTCAGTCTGTTGAAGTTCCAGATGAACTCAGTGGACAGTCCTCGAGTGAGAGCTCTCAGCTGGAGACCAAGGTGAGTGGAGTGCAGGTGACTCCTGGGGTGAAGAGAGGTTCTCTACTGGTGAGGGTTGGCGAGATGGACAGGAGCTCCAAGACATCCAAGCCTGTCTCGATGAAGCTCGACTTTGGCTCTCCCAAGCCGCCTCGTAGAGAGGAACTGGAGGAGCAGGCCTCTATAGACTTTGTGTTCATCCCCCCCGAGACCAAGGAGAGAGTCCTCACCGAGCACCAGAAAGAGGTCAAGAGAACCAAAAGGGTTGACATTCCTGCCATGTACAACAACCTGGATTCTTCCCTTGATACCACGGTCTTCACCCAGTACACACAGAGTCAGGAGGAATCACTGGACAAATTTCCAGCAGTTGAGCAAGCCGAAGATTCTGAAAAGGATGAGGTTAAAGCGGAGGTTCCAGAAGAAAACATGGAAATGGGGGAGGACGTTGCTGACGATACCCAAGAATATATCAGTCCAACCAATGAGACAACAGAATCTGCAAAGGGAGAGGAGAAGCCTGCTGATGAGTTACTTCCTGAGTCTGCAGACATTTCCATGGAGGAGGATGTCAATGAAGATGTTTTATTGAAGGAAGACTCTGCCGTGGAGACCAGAGAGGACACCAGCCCTGACGTCTCTGGCGGCTCTGACATGGTCTCAGGGACGCCTCAGAAAACCAACAGTCGTCGCCAGTCTTTCATCACTCTGGAGAAGTATGCTGAGGGGAAGCCTGCTAGTCCTGCCAGCGTGGTAACGTTTACAGGCCCCCTCACCAGGACTGCTAACAGCCAGGCGCAGGCGGCTTCCTCTCCAGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGGGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCACCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCACCGGCAGGGGCCGGCCAGGCACAGGCGGCTTCCTCTCCGGAACCACCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCACCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCCGGCCAGGCGCAGGCGGCTTCCTCTCCGGAACCCCCGGCAGGGGCTGACACTGACTCGCAGGAGACTGAACAAGCAAGATGTAGAAGCTCCAAGAATCAGTCTTCCAAAAATGAGGGAGAGAAACCTGAACCTTCAGAAGACAAAAAGCAATCCGAGGTTGAGAAACCAGCTGAGAAAAGAACAAGTGAAACCGACGAGGACGACGTCATCCCAGACACCCAGACTCCGGTGGAAATACTGAAGGAAGTTCTAGTTCCTGCATTTGAAGAAGTAGTAATGGGAAACAACAGTCAGAAAGAAGAGGAATCTCAAggtcttctggaaggttctcccagttCCCAGGCCGATCTGAGCCAAGGTGAACCAAGGCGGTCCGGAAGGCGGAGGAGCAGGCCACTGAGACCAGGAGAAGATGCAGAGGAATGGGAAGAGAAAGACAAACGCAGGAAGTCTCAACCCAAAGAGGCAGAGTGtcaaatggattcaccaaagacGGTGCCCTCTCCTGTCAGTCAAGCAGACAGTCAGTCACAAGGTAGAGCCAGTAGGAGAAGTAAGCTGGCTGTTAACGTGGAGGACCGTGGAAAAGACAAGCTGAGAAAAATAAGTCACAAGGAGGAGAGCGAGTTGAGCCGATCAAATTCACAGATGGCCACGCCTTCACCTGCTGCTGATATCAACAGCCAATCACAGAGTAGCATGGTATCAAGTAGAAGGAGCAGCAAATCAGAGGATCTGGTCAAAGACAAACAAAAGAGAGGTGTTGCAGAGGAAGAGCTCAGTCAAAGTGACTCTCAAACGGACACCCCCTCTGCCTCTGATAATGATAGCCAATCACAGAGTAGATGTAGTCAGAGGAGTAAGTTGGCTGTGGAAGTGGAGGATGATTGCAGGCAGAAACTAAGGAGTATTAGGGCTCAGAAGGTGGAGGAAAAGACGAGCCAAATTGATTCACATGTAGCCAAACCATCTCAACAAGAGAGCCAGTCACAGGGTAGTGCAAGCTGGAAGAGCAAACCACTCCGTGATTTGGAGGAGGTTGACTTTGTCGATGAGGTTGACAAGCAGGATCCTACTGAGCACGAAAGTGATTCTCAGATTGCCACACCCTCTCCTGCTGATCAAACAGGAGATGGCCAATCACAGGGTAGATCTAGCAGGAGGAGTAAATTGGTCACCGAGTCAGAAGAAGAGGGTAAAGGCAAGCCGAAGAGGAGAGGCGGTACAGAGCTACTCAGCCAAATTGACTCACAGACTACACCTTCAACCACACCTTCAGCCACTCCAACAGACAGCCAGTCGCAGGGTAGAGCAAGCAGGAGAAGCAAGGTTCCCATTGAAGTGGCTGAGTCTGAGGTCAAAAGAAGCCTGCATTTGGCCACTGATTCAGCAGCAACACCAGAGAAGAGCCAGACTCATTATCAGGTCGCTCCTTCTGCCACCAGTCCAACAGACCGCCAGCTGAGGCCCAGGAGCAGAACCAGTAAAAGAAACAAGATGTTAAAGGAGCAGGTAAAAGCCAACAGCAGCCCTAACCCAACTcctaacatggagagacagaactCACAGGTGGCAGATACAGAATCCTCACAAGGAAGTGGAAGGACTAAAAGGCGTAAGGCCTCCCAGGCCTTACTAGGCTCCAACGTGGAGAACTCTGAGTCGGATGCTTCAGAGCCCCGGGAGGATGTCCAGAAAGGCCGGAAGCCCACGTCAGCTGGAGCGGTTCCAAGCCCTCTGGCTACAGTTGGATCAGCAGAGCCAGGGGCTGACCAAGAGGTCCCAATGGATAGTTCTGAAACTTCTCTAAAGTCAGACTCGCAAAACCCATCAAGTGAGGCCTTAGAAGTCGTCAAGATTCCACAGGATGTGGAGGAAGCCCTTAAAATGGTCAACTCCCTTAAACCTGAAGTGCTAGTTCCAAGTCTTCCTGTGATAACTAAGAAAGATCTGGGGCAGATGGAGACGGACATGGGGTGTGTGATTGAGGCAGTTGACCCCTTTGTGCCAGAGAAGGCAGAAAATACTAAGCTTTCTTCTCAACAGACGGAACCTGATCTAGAACATATGAAGAGCCAGGATGTGTGTATGTCTCGACAGAAGAAGGAACGTGGACATAAATGGTCAAAAAGCAAAGCGAATTTCAACACCGTCTCCTCTCGGGAGAGTGACCATGATGACCTAGAGTGTGACCATGATGACCTAGAGTGTGACAGGCCAACACAGATCCAAAGAAAGCTGCTCAATGACTCTGAGCAGGCCAACTCTCTCACGCCTTCCACTGAAGGAAATGCCATCTCTGAAGATGGACTAAACAAACTATGTACCCCTCCCATTGCCAATGGCCTCCCCACAGATACTTCACCTACTGAGGCAACAGAGGAGAAACTGAGTCTTCAGGTCTCTGAGTCCTCAGAGAAGGTTTTAGATGGGCTGAAGCCTGTGGCTGTCTCCAGTGAGGAGGTGACCGAGGAGCAGATGGGAGAACACGAGGAGAACAGACATCCAGAGTCTGCTACCAATGTTCTAGAGGAGGACCAACTGGAAGATGTTGGCAGGTCTATTGGGCAAGCCCAGTCAGGGTGTTCCAAAGCCTTAGATGAGGAACAACGGGAGGAGCAGTACACATCTATCAAAGGACAGCCAGAGGCTGACAGCACCTCTACTGGAACCAGAGAAACCCACACTGAGCCTCAGGCGGACAACATTCAAGATATCACTCCTCTCCAAGAGAGGGCAAAAACTGACAATGTATCTGGCCTCGAGTGTGAAGAGGAGGGTGAAGAAACCCAGATGGCCAATAATGACCTAGATCTATCTCCTTTAAACTCTTTTATCCTTGTGTCCTCTGACCTTCACGGAGCCCCAGTGCCTCTACATCACCCAAGTACCTCTAAAGACATGTTGTGCCAAGACTCTCCACCCAAGCAGAAGGATGCTGTGATGGGGCTGGAGGTGGGCCATAGCCCCAGCAGTGGCAGGACCAGGGGGTTGTGGTCCCCCTTAGCTtccccctccacctctatcctGAAGAAGGGACAGAAAAGACCAATAGAAGAGGAGAGTCCTTCGCCTTTCACCAAGTCTCGACGAGTATCATTTGCTGACCCAATTCAACACCAGGAGCTGGCAGATGACATTGACCGTCGCAGCCCTGTCATCCGATCCAGCTCCCCAAGAGACAAAACTACCAGCAGCAGCATCCCTCAGGCGAAGTACATCACAACACCAACAAAGGGCTTACTGATCCTCAGTCCACGCCATCTCCGCAGCCCGGGGTACAAGAGCTCCAAGAAATGCCTGATCTCTGAGCTGGGCCAGGAGCCGAGGCCCATCCCTAAGGACTGTGTGTACCCGGCCCTGGTCCGCTGTTCTACCCCTGTGGAAGCAGTGCTGCCTCAGATCACCTCCAACATGTGGCCTCGTGGCTTTGGCCAGCTTGTGCGAGCCCGGAATATCAAAACTGTCGGAGACCTCAGTGCTCTCACACCAAGTGAAATCAAGAACCTTCCCATTCGTTCCCCAAAGATTTCTAATGTGAAGAAAGCACTTAAAATATATCACGAACAGCAGCAGAAGGGCCGTAGTGATGAGCTAAAGAGTTTTGAGGAGATGGAGAAGCTGACATCTGAGCTGGAGGAGCCAACTGTTCCTCAGAACCAGGGAGAGGACAAGACTCCAGGAGATGCCCTAGTCACAGAGTTGTTGGATGAGCCAGTGCCCAAGGAGCACGAGGAACCTCCAGAGGAGAGACTGGACCAGAGCAGGCCTGACCACCAGAAGACTGCTGAGGGTGGTCTGATGTTGGAGGTGGAGTCTCTGGCGGCTCATCTGACTGGGGAGGGATTGAGCCACTGCTCCTCTGACCAGCTGGTTCTGATCCATGATCAGCTGGGAGGCATGATGAGgacggtggtgctgcagctgcaGAGCAGACTACTGGCTCAGAACAAGGACAGCGGACCCTGATCCAAACACTACAGTCCCAGGGTTTGGATTACATATTTTGGGAATGCCCCACGTGAAGTCTCTTGAAGATGCCTATTGACAACTGTGGGGGGGCGGCACATTGGTGTTTGAATTCTTACAGAGGTCTTGATTTGTTCATGTGGGGGCCTGGGCCCTCCAGCCCCCAATCAAGGTTTCCCCTCTCAAAATCTAACAATTTTTTCAGAATGGCACAAATTCCCCGATATCAGGGTACTCATGTCAACATGTTTGCAACCAGAGCAACTCCGACTCTTAAGATCTAAGAGTTAACCAAGTACTACACCACAAGTCCACCAGGATTGTGTTTTTAAACTCTTTTTCCTTGTCCTCTCTGATGGCTGAGGGAGACATTTTTATAAATGCTAGTTCAGGCTAAAAAGTAGTGGTGGCGATTAGTTGTCATGACGAGTGAAAGCGAAGCATGGTCTCTGATTGGCTATACCAAGGCTTTGCCAGGAAGTGATATTTTAACCATACATTGATCTGGAGGATGGCACTTTTTACATTGTGTACCTATTAAATAAAGGTTTGAAAGATG

Function

GO: NA

KEGG:

id description
K11138 RIF1; telomere-associated protein RIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066922 lncRNA downstream 8887 37347512 ~ 37349257 (-) True G1806609
TU2066896 lncRNA downstream 64573 37289118 ~ 37293571 (-) True G1806590
TU2066852 lncRNA downstream 126083 37231320 ~ 37232061 (-) True G1806558
TU2066831 lncRNA downstream 136279 37218976 ~ 37221865 (-) True G1806539
TU2066827 lncRNA downstream 166088 37191055 ~ 37192056 (-) True G1806535
TU2067005 lncRNA upstream 85647 37475963 ~ 37482618 (-) True G1806686
TU2067007 lncRNA upstream 86020 37476336 ~ 37483685 (-) True G1806687
TU2067029 lncRNA upstream 139049 37529365 ~ 37529684 (-) True G1806708
TU2067038 lncRNA upstream 148984 37539300 ~ 37539499 (-) True G1806717
TU2067252 lncRNA upstream 155413 37545729 ~ 37575934 (-) True LOC110501819
XM_021579645.2 mRNA downstream 240307 37105485 ~ 37117837 (-) True hacd2
XM_036959224.1 mRNA downstream 258523 36980096 ~ 37099621 (-) True LOC110501809
XM_036959226.1 mRNA downstream 259839 36980096 ~ 37098305 (-) False LOC110501809
XM_036959220.1 mRNA downstream 520561 36552698 ~ 36837583 (-) False LOC110501806
XM_021579657.2 mRNA upstream 8754 37399070 ~ 37411510 (-) True LOC110501817
XM_036959231.1 mRNA upstream 42617 37432933 ~ 37524672 (-) False LOC110501818
XM_036959232.1 mRNA upstream 42617 37432933 ~ 37524677 (-) False LOC110501818
XM_036959233.1 mRNA upstream 42617 37432933 ~ 37528625 (-) False LOC110501818
XM_036959234.1 mRNA upstream 42617 37432933 ~ 37528626 (-) True LOC110501818
TU2066735 other downstream 245670 37043561 ~ 37112474 (-) True G1806449
TU2066670 other downstream 422057 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 779433 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 1298376 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 2138445 35207463 ~ 35219699 (-) True LOC110502094
TU2067385 other upstream 369655 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 803106 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 818474 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 1185550 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1553820 38944136 ~ 38944530 (-) False G1808299

Expression Profile