RNA id: XM_036959224.1


Basic Information

Item Value
RNA id XM_036959224.1
length 5719
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110501809
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36980096 ~ 37099621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGCAGTAAACCGACGATGCCTGCCTACAACCACAATGCATGACTCCATATCATACCCTGCAGGGATTGCGCGcagaaaaaaaaataattccGGTCAAtctgtctgaatactttacgtTCGACGTTGCATGAATACAAATAGGGGACGGAATGAGGACCAAATGCTGCGGTATCGTTGGGTGATTTGTGCTGCATGAATCGTATGGATCAAAACTGGATTGAGTCTTCAGGGATTTAGCAGTTTGTCATACTATGCAGTCATAGGCTAATACCGATGAGAACCGTTTTTTTTGGATGTCGGTGTGTGGACTTTTGGGTGTGTGGAATTGCGGAGTCTTCCTCCCCTCCGCTCGGCAATGAAAGCGCGCGAGGGTCGTGCTGTGACGGTTTCGTAATTTACATTTCATTtgcatttgagtaatttagcagatgctcttatccagagcgatgtATTGTAGTGAGTGGCTACATTTTCATATTAATTTTATCCAGAGCGATGTATTGTAGTGAGTGGCTACATTTTCATATTAATTTTAAGGATGTAACCATCCAAGCAGCGACAAGATGCACAGGTGTACGACTACGACTTCTAGCACTGGATGAGACGCAAAACTAATGTAGCCTAGACGTCATTATGGGATTGTCCCCCACAACATCGcattttttattttcattattttttaaaaataaagtgTTTGGGTAACATATTCGCAACGTAATATATGTTTGTATGACCAACTATTGGAGTTGTGTAACGTTTTTATTCCATGGCCTATATAACAACATTCGGCAACATGTCTGCATACAGAGCTTCATGTTTGGATTATAATTAATTAAAACGAACTTCTCCTGGAAATATATTATCCACCATAGTTGCGTTTGTTGTTATCGTATATCTCCCATGTGACTTTTCTTCCTATTTCATTGATTTTAAGTGATTTTCAGAGCATTTTACCATCTGCTGCCAAATTTATCTAAAGTCATGAATAGGCCTATGCATCACATTTTCAACAGTATCCTGGACACACATTTGTTCTACCGTAGTGAACTGGACACATTTAATTGACTTTAACGTCCTCTGATTGTTACCTTACCTCTAGAATTAACCCGTCGCTGATTTACCAGGCGTTTCGTAGACCTGCCGCCGACGAAAACATTGTAACAACGTAACAAATGTAACAACATTTGTAACAAGAACAATAGCCTAATTCTTAAAAAGTTTAGGGTCGAGTTGGCTTTCATGAGAAACTTTAAGCAGGCGCGTGTGTGGTTCTGTGCGTTGCTTTTTCTATTATTTTTTATCTGAGAAATACCATGTCCCGATCTAACAGTGTTAGCCCGCCCGGAGTCGGTGCGCCTGGGCTGAGGGGAGGGACTGAACTGAGATCAGCTTGGGGCGAGTCTGAGTATATTGCCAACGGATGCCCATACTCGGCTAGATCTCCGAGCAAAAAGCTCGCCCGTTCGAACAGCAGATGGACTGAAGGAGATGATGATCCCGACCGACAGCCCAGACCAGGACGAGCCACGACAATGGTTAGCAGGGTCAGTTTTAGGTCTAGGTCTGCGTGGCAAGAGCATGGCACTGGAGAGGAGATTCGAAACAACAACCGATCGTCCCCTAAACACGCAGATGGAGCCGTGGAAGTGAGACCCATATCGGTGGAGTTGGGCTTGGAGGACCGTAGAGTGAAGGGTACCAAACCCGAGGAGGAGGAACTCATGCCCGAAGTTCACATTTCCATGGTCGCGTGCTGCAGCAGCATGATGCAGATTTTCAGATCCAAGAAATTCCAATCGGAGAAGTTGGAGAGGCTGTACCAGCGTTACTTTTTCCGGCTCAACCAGAGCAGTTTGACCATGCTCATGGCCGTTTTGGTGCTCCTGTGCGCGGTCATGCTGACATTCCATTGCGCGGGGGGAGGATACCGGATAGTTTACGTTGTGGTCTTTTCCTTGGCCATCTTACTTATCCTCATCTTGATGGTGGTGTGCAATCGGAACGGGTTTCATCAGGATCACATGTGGATAGTCTGCTATGTGGTCATTCTAGTCGTGCTGTTATTACAAGTGATCGGGGTCCTCCTCGTACATCCGCAAAGTGCCTCTGAGGGAATTTGGTGGACAGTGTTTTTTATCCATGTCATTTACACACTGCTCCCGGTTCGGATGCGGGCTGCCGTTATCACTGGAGTTATGCTGTCTGCCATCCATGTGGTCGGGTCTTGGAAGTTAAACGAAAAGGATGCCTTTGTATGGAAGCAGATAGTGTCCAACGTCCTGATCTTCTCCTGTACTAACATCGTGGGCGTGTGTACCCACTACCCAGCCGAGGGCTCCCAGAGACAAGCCTTCCAGGAGACCAGGGAATGCATACAGGCTCGCCTTCACTCACAGAGGGAGAACCAGCAGCAGGAGCGTCTCCTGCTCTCCGTGCTTCCCCGTCATGTTGCCATGGAGATGAAAGCTGACATTAACGCCAAGCAGGAAGACATGATGTTTCACAAGATCTACATCCAGAAGCACGACAACGTCAGTATCCTGTTTGCAGATATTGAAGGGTTTACCAGTCTGGCGTCCCAGTGTACTGCCCAGGAGCTGGTGATGACTCTCAACGAACTGTTTGCCCGCTTCGACAAGCTGGCTGCGGAAAACCACTGCCTGCGTATTAAGATCCTGGGAGACTGCTACTACTGTGTGTCTGGGCTGCCAGAGGCCCGGGCCGACCACGCATCCTGCTGTGTGGAAATGGGGGTGGACATGATCGAGGCCATCTCGCTGGTGAGAGAGGTGACGGGGGTCAACGTGAACATGCGTGTGGGAATCCATAGCGGCAGGGTCCACTGTGGGGTGCTGGGACTCAGGAAGTGGCAGTTTGATGTGTGGTCCAACGATGTCACGTTAGCCAATCACATGGAGGCCGGGGGTGCGGCAGGGCGGATCCACATCACCAAGGCCACTCTGAATTACCTGAGTGGAGACTATGAGGTAGAGCCAGGATCAGGAGGAGCAAGGAACGTCTATCTGAAGAAACACAACATAGAAACCTACCTCATCGTGGGCTGCAGCCAGAaaaggAAAGACGAGAAGGCGATGATAGCCAAGATGAACCGTCAGCGAGCCAACTCTGTCACCCACAACATGGGCCCCTGGACCGACCGGCCCTTCTACAACCACATGGGAGGAAACCAGATCTCTAAGGAGATGAAGAGGATGGGATTTGAAGACCCCAAGGACAAACATTTCATTTTCAGAAACACGCAGGAAAACCTGAACCCAGAAGACGAGGTGGACGAGTTCCTAGGCAGAGCCATCGACGCCAGGAGTATCGACCGGCTACGCTCAGAACACGTCAAGAAGTTCCTGCTGACCTTCAGAGAACCAGACCTGGAGAAGAAGTACTCCAAACAAGTGGACTCCAGATTTGGAGCGTACGTGGCCTGCGCCTCTCTCGTCTTCCTTTTCATCTGTTTCATCCAGATTGTCATTGTACCACActccaCTCTGATGATTGGGTTCTATGTCACCTGTCTGATCATCCTGATGGCTGTCATGTTTGTCTCAGCAATCTACTCCTGTTTTGGGTTTTTCCCAGCGTCTCTACAGACTCTGTCCAAGATGATAGTCCAGTCCAGACTCAACAGCACCCTGGTGGGAGTCTTCACCATCCTCctggtctttctctctgccttcaTCAACATCTTCACCTGTAGTACTGGAGACCTGAGGGAGTGTCTGAGCTGGGAACTGAACATCAGTCGCAGCAGTGTGAACGCCTGCCATGCACGCAGCCTCAACTACACCCTCGAATCACTGGACGGCTTCTGTGGCAGCCCCTCACCCAACTGCAACttccctgagTACTTCTCTTCCTGTGTGTTGTTGACCCTGCTGGCCAGCTCGGTTTTCCTACAGGTCAGCAGTATAGGTAAACTCCTACTCATGCTCTTCATCGAGATCTTCTACATCCTCATCATGGAGGTGCCAGAGGTCAGCCTGTTCGACAACGTAGACCTGCTGGTCATGGCCAACGCTATTGAGCACATAAATGGAACAAGcTGTGTGATGGACTCTAAGGTCCCTCTGAAGATCATGACTCCCGTGGTCATCACTGTCTTCGTCCTGGCTTTGTATCTACACGCCCAGCAGGTGGAGTCCACAGCCAGACTCGACTTCCTCTGGAAACTACAGgccacagaggagaaagaggagatggaggagctaCAGGCTTACAACCGTCGCCTCCTCCACAACATCCTCCCCAAAGACGTGGCTGCTCACTTTCTGGCGCGAGAGCGTCGGAACGACGagctctactaccagtcctgtgaGTGTGTGGCCGTCATGTTCGCCTCGATCTCCAACTTCTCTGAGTTCTACATAGAGCTGGAGGCCAACAACGAAGGAGTGGAGTGTCTCAGGCTGCTCAACGAGATCATTGCAGATTTTGACGAGaTCATCAGTGAGGACCAGTTCCGCCAGCTGGAGAAGATAAAGACCATCGGCAGTACCTACATGGCAGCCTCTGGCCTCAACGACTCTACCTACGACAAGGAAGGCCGCTCACACATCAGAGCCCTGGCAGACTACGCCATGAGACTCATGGATCAGATGAAGTACATTAACGAACACTCCTTCAATAACTTCAAGATGAAGATCGGTCTGAACATGGGTCCGGTGGTGGCTGGGGTGATCGGGGCCAGGAAGCCCCAGTATGACATCTGGGGGAATACCGTCAACGTGGCCAGCCGCATGGACAGCACCGGTGTACCTGAGCGGATCCAGGTGACCTCTGACCTGTACAACGTGCTGAACTCCTATAACTACACACTAGAGTGCCGAGGCCTCGTCAAGGTGAAGGGTAAAGGAGAGATGCAGACCTACTTCCTCACTGGAGGACCTCCCAGCAGTTAACAcccaggctgtgtcccaaatggaaacctattccctatatagtacactacttttgaccagggacatagggctctgttcaaaagtagtgcactatataggaaattgggtgccatttcagacacagcctaTTCAGAAGCAGCCCCAGTAACAGACTGACACTGGTGCAGGAaaaggctgagaggagaggggtgattGGACTAAAGGGggctgaccccccccccaagTCTTTGACGAGCAGGCTCATGGACCTGTGTTAGCTTGGGGAACTGACTGCCCCCCACCAACACCCCTTGTCCTAGGTTTATCTCCTCCCTACCTGCAGAGGTCAGACTCCGATTGGACCAGAGTGAAGGAGAACCCCCAAGCCGAGAGGAGGCTGGgtgggaaagagacagggaggagcTTAGAGGGCCTGGGTTCGCTGAAGAGACCAAAGAAATACCATCagacaacagcagacagagacACATTGTGACAGCAGCATTCTCTCAAGGTCTTATTTCTATAGGTCATAGTGTGAGTTAAGGAACGGCTAAAAGCCAATCATCTCGCAGTACTGTAGATCTCTAAGGTTTTCTGAGGAAATCGATCCAATATGTGTGTCTTCATAGACATTCTGCTGAAGGATCCAAGTCGCTCTAAACAAAACCTGCATGAAGACACTGAAACCCATATGAACACGTAaaacattcggaaagtattcaggccccttcgctttttccacattttagtgTGTTagactttttctaaaatggattaaataaaaaatgtcctcatcagtctacacacaataccccataacg

Function

GO: NA

KEGG:

id description
K08045 ADCY5; adenylate cyclase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2066682 lncRNA downstream 7156 36962661 ~ 36972940 (-) True G1806403
TU2066678 lncRNA downstream 34638 36944865 ~ 36945458 (-) True G1806401
TU2066672 lncRNA downstream 40426 36939401 ~ 36939670 (-) True G1806395
TU2066664 lncRNA downstream 56253 36923479 ~ 36923843 (-) True G1806387
TU2066663 lncRNA downstream 57042 36922605 ~ 36923054 (-) True G1806386
TU2066797 lncRNA upstream 52035 37151656 ~ 37151862 (-) True G1806511
TU2066827 lncRNA upstream 91434 37191055 ~ 37192056 (-) True G1806535
TU2066831 lncRNA upstream 119355 37218976 ~ 37221865 (-) True G1806539
TU2066852 lncRNA upstream 131699 37231320 ~ 37232061 (-) True G1806558
TU2066896 lncRNA upstream 189497 37289118 ~ 37293571 (-) True G1806590
XM_036959218.1 mRNA downstream 142513 36552698 ~ 36837583 (-) False LOC110501806
XM_021579645.2 mRNA upstream 5864 37105485 ~ 37117837 (-) True hacd2
XM_021579653.2 mRNA upstream 258523 37358144 ~ 37390316 (-) True LOC110501816
XM_021579657.2 mRNA upstream 299449 37399070 ~ 37411510 (-) True LOC110501817
XM_036959231.1 mRNA upstream 333312 37432933 ~ 37524672 (-) False LOC110501818
XM_036959232.1 mRNA upstream 333312 37432933 ~ 37524677 (-) False LOC110501818
TU2066670 other downstream 44009 36935658 ~ 36936087 (-) True G1806393
TU2066409 other downstream 401385 36577748 ~ 36578711 (-) True LOC110501806
TU2066167 other downstream 920328 36057844 ~ 36059768 (-) True G1805927
TU2064375 other downstream 1760397 35207463 ~ 35219699 (-) True LOC110502094
TU2064031 other downstream 1853263 35126479 ~ 35126833 (-) True G1803964
TU2067385 other upstream 660350 37759971 ~ 37760248 (-) True G1807020
TU2068246 other upstream 1093801 38193422 ~ 38195096 (-) True G1807750
TU2068217 other upstream 1109169 38208790 ~ 38213187 (-) False G1807731
TU2068420 other upstream 1476245 38575866 ~ 38612287 (-) True LOC110502145
TU2068897 other upstream 1844515 38944136 ~ 38944530 (-) False G1808299

Expression Profile