RNA id: TCONS_00051801


Basic Information

Item Value
RNA id TCONS_00051801
length 4194
RNA type mRNA
GC content 0.53
exon number 19
gene id XLOC_026590
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35632773 ~ 35801146 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGAAAGATCAGGAATTACTTCAAGCGGTGAAGACTGAGGACCTGATGACGGTGCAGAAGCTCCTGCAGAGGCCCAAACCCGGGAAAGCAAAGTTGCTGGGCTCGGCCAAGAGGGTGAATGTCAACTTCCAGGACACTGATGGGTTTTCACCACTGCATCATGCGGCTCTCAATGGAAATGTGGAAGTCATATCACTACTGCTGGACTCTCAGGCCCTAGTGGACATCAGGGACCAGAAAGGGATGCGTCCTCTACATTATGCAGCGTGGCAGGGGAAGTCGGAGCCCATGAAGCTACTGCTGAAGTCGGGCTCTTCAGTGAACGGTCAGTCGGATGAGGGTCAGATCCCCCTGCACCTGGCTGCTCAGCACGGACACTATGACGTGTCTGAGATGCTTCTGCAGCACCAGTCAAACCCCTGCATAGTGGACAATGCTGGAAAGACTCCACTGGACCTGGCTTGTGAATTCGGTCGGGTCGGGGTGGTCCAGCTGCTTCTGAACAGTAACATGTGTGCTGCTCTGCTGGAGCCCAAACCGGGAGACTCCACTGATCCCAATGGCACCAGCCCACTTCATCTTGCTGCCAAGAACGGCCACATCGACATCATCAGACTGCTGATCCAGGCTGGCATCGATATCAACAGGCAGACCAAAGCGGGCACTGCCCTCCATGAAGCTGCGCTGTGTGGGAAGACTGATGTGGTGCGCCTCCTGCTGGATAGTGGCATCAATGCAGCGGTGAGAAACACATACAGCCAGACTGCGCTGGACATCGTCTACCAGTTTACTGCCACACAGGCCAGCCGCGAGATCAAGCAGATGCTACGAGGTAAGATGAGAGATGCCTCAGCAGCCTTGCAGGTCAGGGCACTGAAGGACTACTGCAACAACTACGACCTGACGAGTCTTAACATAAAGGCTGGAGATGTCATCACGGTTCTGGAGCAGCATTCAGACGGGAGGTGGAAAGGCTGCATACATGATAACCGCACAGGCAATGACAGAGTGGGCTACTTCCCCTCCAGCATGGTGGAGGTGATCAGTAAGAGGCCTGGGGCTGCGGGTGGAGACCGCAGTAGTGTGGGCAGTTCAGGCAGTGTGGCCAGTGCCCGATCCTCTGGCAGTGGACAGAGCGCAGGCAGCACCAGTATCCTCCATGCTCAAGCAGAGGGAGTCAAGCTTCTGGCCACGGTTTTGTCTCAGTCTGCCAAAGCAAAAGAACACCTGCTGGAGCAGACCAAGTCTTTGGACCACCCGTCTCATGCTTCCAGCAACAAGGGACCCTCCTCGCGCAGTCAGAGTTTGTCAAGCTGTCCACTTCACGAGCAGCCATATGGGGAGGCGGTGTCCCAGAGGAAAGGGGAGGCACCGCCTGAGGGGAAGGACTTAACAGCTATTGGTGTAACTAAACCTGGACATCGAAAGAAGATAACTTCAGAGATCAATAAGATCAGTGTTAATGAGTGGCTGCCTGACCAAAAACCGGCGAGTCTTGGAGAGTGGTTAGCCATGATTGGATTGAGCCAGTATCACCAGGTTTTAGTCCAAAATGGCTACGAAAACATTGACTTTATCACTGATATCACGTGGGAGGATCTTCAGGAGATCGGGATTACAAAACTTGGACACCAGAAGAAGCTAATGCTTGCAGTGAAGAAGCTGGCAGAGATCAAGAAGGCATCTGATGGTCGTAATACATTGCGCAAAAAGCCTCCAGCTGCTCAGGAAGTAATGGCTATTGAGAGCCCACCCCATGACAGTGGAGAGTGTATGTCCCCTAAAATGAGCACTTTCCAGGACAGTGAACTGAGCGGGGAGTTACAGGCAGCTCTTACGCGCCCTGCTGATGTGCAGGATGGCACAGAGGTCAGAACCAACAGTGGCCCACAGCACAGAGCACGCAGTCTGCATGAGAACAGCATTAATAAGAGCCGAGACACAGAAGAGCATAGTGGACCACCCAAAAAGGAGGCACGTACCATGCGACAGAGCAGCCAGGGAGGACAGAGAAATGTTTCATCATCGCAGCCAAAACCACGTCAGTCTTATCCCCAAGGTACAGGTCCTCCCTATACTCCACCTCAAACGCCCACCAAAACAAAGCCTCCCGCCTCACAGACAACAAGCAACCCCCCAGGAAAACCGAAACCTAGTCCGCAGATTGTCCAGCAAACAGAAAAACCTATAACACCTCGTGGTCACCCGCAATCCCCAACTCAAAGGTCCCATCCACACCCTGCTGCCCAGCCTGTTGAATCAATAGAAGCTCCTCCCCAAGGACCTGCTGTTTCAGTGCCACTCTTGTGCCTGCCACCAGATGGCGATGAAGCTTGTGATGAGTATGGTCTGCCTAAAAAACGTGCCCATAGCCTAAATCGCTATGCTGTGTCTGATGGTGAGCAGGAGCGGGATGAGCTGAATGTGCCTGATTCAGGAGGAAAATATGCTACAGTACAGCCTAGGGTGGGTCGCAGCAACTCAATGAAGGGACAGGCAGACAAGAATGTCAACCGAAGCCAGTCTTTTGCACTCAGACAAAAAAAGAAGggtcctcctccacctcctcctaaACGATCTAGTTCAGCCATCTCAAGCTCCAGTAGTAATCTGACAGAAGTGCCCAAGGAGACTAACAGTGGACCTCTTCTGGATATTCCCTATCAACCACAAAGGCGTGCCAGTGACCTGGGTGGCACTGTAGACACAGGCAGTGCAGGTAGTGTGAGAAGCATTGCAGCCATGTTAGAAATGTCCTCTATTGGTGGAGGTGCAAAGGGTCTCGCTTTGCAGAAATCTGCTGGTCACTATCTGCAGGTGGGTTCAGGAGCAAAGCAACGTGATGCCATTGGACTAGATGGGGAAGTAGTGAACCGCCGCAGGACCATTAGTGGACCTGTGACTGATTTAGTAGCAGCTGCTAAGCGAGGACCAGAGTTAATTCAGGACAGACAATGCACTGAAGCCCAGCCTAGTTCTAGTGGGAGTTCCGCTGAGAATCTTCCATTTGCTGAAGATGGAAATCTCACTATCAAACAAAGACCTAGACAAGGAAAGGACGAGGCTGAAGAAGGCCTAGAAATTTCATATTCTTTACCCCATGAAGATCTTTCTCGTGCCGATTCCACAGCCTCATTGAAAAGGAGTGTCCAGACCACCAGGCACCAACCAAATGGCACCAAGTTCCATCTCACAGAGTCAAACACAGTTAAGCGCCGTCCCAAGAGCAAAGACAAAGATGCAGAGGAACTTCAAGATGGACAGATGCCTGTACCATATGAGAATGGGACAGGCACAATTAAAAGGCGTCCTGCGTCAGATGTGACTGTTTCAGAGCAGCCAAGGCCCCAAGAACATCCTGAGAACTCGCCCCGTCGAGACAGTGCCGACCTGGAAGGCCATGTCACAGAAAGTACCCCTCGCAAGTCTGTCAAACCTCCAGTGTCTCCCAAACCTGTTCTGGCCCAGCACATGAAGAAGCAGGGACCAACAGCTGCCATCACCAAGAAAGCCCCCTTTCCTGGACCAGCTGGGGCACCTGGCAGCCCAGGTACTACACAGTGCGGCCCTTTCACTTGCCCTGTCTTTACACAATTATTTGAAGGAAAAAAAGTACCTCCTCCGATTTCACCAAAACCTACACCCCCTCCCACAGCTCCAAAACCATCAAAAAATGTTCTTCAGTCTTTAAATGCAACACCTAATCCCACTCCCACACCTTCTCCAGCCAAACAGACTGTCACCAGAATGGCTAGTACAGCCTCTGCCCAGACCAACCACCCTGTCAAGGCTACAACCCCACCAGCCTTGATTGTGCAGACGCCTCACACACCCCAGTCCCCTCACACTCCACAGACACCTCAAACTCCACAAACGCCCCAAACTCCCCCAACCCCCACCCCTACACCCCCACCTGTAAAACCTCCTCGCTCCTCAATTAGTGGGGTGTCCATGGACAGTTCAACTGGATCAGCATTGGTCGCCGGGGTTGTGACAGCAGATGCAGTGCACCAGAAGATAGAGGAGACCAGTGCCTCACTGGCTGCAGCCCTGCAGGCAGTAGAACAGAAGATCAAAGAGGATGGACAAAAAGACTCAATTGCTGAAAACAAGAGCACAGTGAGTATCCTTGATGACATCGGCAGCATGTTTGATGACCTGGCCGACCAGCTGGATGCAATGCTGGAGTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-071115-3 Predicted to be located in cytoplasm. Orthologous to human CASKIN1 (CASK interacting protein 1).

Ensembl:

ensembl_id ENSDART00000031390

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053069 lncRNA downstream 69035 35565128 ~ 35574451 (-) True XLOC_026588
TCONS_00053068 lncRNA downstream 695425 34947402 ~ 34948061 (-) False XLOC_026585
TCONS_00051793 lncRNA downstream 837407 34801999 ~ 34806079 (-) False XLOC_026584
TCONS_00053067 lncRNA downstream 838768 34801999 ~ 34804718 (-) False XLOC_026584
TCONS_00051790 lncRNA downstream 864699 34767541 ~ 34778787 (-) True XLOC_026583
TCONS_00051803 lncRNA upstream 56909 35857130 ~ 35858160 (-) False XLOC_026591
TCONS_00051804 lncRNA upstream 62155 35862376 ~ 35864621 (-) True XLOC_026591
TCONS_00051807 lncRNA upstream 293419 36093640 ~ 36115291 (-) True XLOC_026592
TCONS_00053070 lncRNA upstream 520018 36320239 ~ 36323625 (-) True XLOC_026600
TCONS_00051826 lncRNA upstream 628735 36428956 ~ 36438526 (-) False XLOC_026603
TCONS_00051799 mRNA downstream 41253 35589212 ~ 35602233 (-) True XLOC_026589
TCONS_00051798 mRNA downstream 88677 35550870 ~ 35554809 (-) True XLOC_026587
TCONS_00051796 mRNA downstream 102105 35535121 ~ 35541381 (-) False XLOC_026586
TCONS_00051797 mRNA downstream 102108 35535980 ~ 35541378 (-) True XLOC_026586
TCONS_00051792 mRNA downstream 826593 34803948 ~ 34816893 (-) False XLOC_026584
TCONS_00051802 mRNA upstream 49171 35849392 ~ 35865040 (-) False XLOC_026591
TCONS_00051805 mRNA upstream 223047 36023268 ~ 36115354 (-) False XLOC_026592
TCONS_00051806 mRNA upstream 238261 36038482 ~ 36115339 (-) False XLOC_026592
TCONS_00051808 mRNA upstream 319561 36119782 ~ 36127234 (-) True XLOC_026593
TCONS_00051809 mRNA upstream 336309 36136530 ~ 36152974 (-) False XLOC_026594
TCONS_00051795 other downstream 695452 34947638 ~ 34948034 (-) True XLOC_026585
TCONS_00051794 other downstream 829517 34805839 ~ 34813969 (-) True XLOC_026584
TCONS_00051789 other downstream 867532 34767541 ~ 34775954 (-) False XLOC_026583
TCONS_00051787 other downstream 889945 34743579 ~ 34753541 (-) True XLOC_026582
TCONS_00051782 other downstream 988488 34652972 ~ 34654998 (-) False XLOC_026581
TCONS_00051816 other upstream 433986 36234207 ~ 36239041 (-) False XLOC_026597
TCONS_00051818 other upstream 440091 36240312 ~ 36246722 (-) False XLOC_026597
TCONS_00051819 other upstream 441447 36241668 ~ 36246795 (-) True XLOC_026597
TCONS_00051846 other upstream 955812 36756033 ~ 36756149 (-) True XLOC_026612
TCONS_00051856 other upstream 1167650 36967871 ~ 36967993 (-) True XLOC_026618

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_06223230_06251304.mRNA True 5317 mRNA 0.53 24 CI01000046 6222779 ~ 6251304 (-)
bowfin (Amia calva) AMCG00018488 True 4054 mRNA 0.64 17 CM030135.1 12319406 ~ 12350065 (-)