RNA id: TCONS_00004957


Basic Information

Item Value
RNA id TCONS_00004957
length 2564
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_002665
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15648857 ~ 15672862 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAAAGAAGGACAAGATGAGAGAAGGAGGTCTGAATCTCTAGTTCTCTCATGCTGAAGCAGGTTTTATTTTACCTACACCTTGCAGGACTAAACACAGGAGGGAAGATGCTGTCTTTCTGTCTTCTGAGTTTGATTGTGACAACTCAAGCTGAGCTTTTGCCAGGCTCCTGCAGCTTTCAGGAGAGCATATGTGACTATATGTCTGACCCGAGCTTTCTCAGCTGGACTCTCAACCCTTCCGGACATTTCATAACAGTCGAAGAGCAGGTCCAGGAGGACCAGAGGAAGGCGGTTCTTCTGGGTCCAGATGTGGATCAGCAGGACTGGAGCTGTTTCAGGATGGTCTATCAGGTCACAGGAGGCGCCTCCCTGCAGGTGCAGAGACGCACTGATGGGGAGAGCTTCGATCGGGTACTCTGGTCGACCCAAAGCTCATCTGACAGCTGGAGGATCGCCAGCATTGACCTACACAACTCTAATGAAGCATTCAAGATTGTCATTGAAGGCAGACTGGGAGCAGAAGAGGGCAGCAGCGTGTCCATCTTTGAGATTCGTATCTCTGACAGATACTGTATAGAGTGTGACTTTGAAGAAGCTCATCTGTGTGGCTACGCAAACCAGTGGAACAAATACTTGAACTGGCGAGTGGGAAAATCAGAAAATAATACACTTAATGATAAAGCAGGTCAGTTCATGTATGTGGACTCGACAGACTCCAAAGGTTTTCAGGAAGTGGCCAAACTGGTGTCCCCGATGACCACAGCACCCCTATCAGGCTGCCTGAGCTTTCAGTACCAGCAGTATCAGGCTGGAGACCATCTGTTCTCCCTGTTCAGCAGAGATCAAGCCGGGCAGTATGAGGAGCTGTGGAGAGCAGATCAAAAGGAGAACAACTTCGCTGATTGGAGTCCAGAAGATAAAGTCTGGATACCTGTACAAGTGGACCTGAAGGCTCCATATCCTGTAGAGTTAGTGTTTGAGGTGGGGTTCAATGGTCCGCATGGAGGTTTCGTGGTTCTTGATGATATTTCCTTTTCTTCAGAGTTTTGTGATGGAAGAACAGAGCCGTCGTTTGATCCAGCTGTTGCCAACTGTGACTTTGAGTCTGGTTTTTGTCAGTATGTTCAGAGTGATGGTTCGCTGTGGAGGAGAGTTTCTGTCAAACCCAACATCTACATGACTGGAGACCATACCACAGGAGCAGGGTCTTTCTTGTTGGCGAACTCTCGCTTGAGTTTGCAGTCTGGATACGTCAGCCGTTTGTTTGGCCCGTCAATGCCTGGGAGTCAGAAATACTGCCTGAAGTTCTTCTACTCTCTGCGAGGTCTCAGTGGAGCTGATCAGGCTTTGTCGGTGTATCTGTATTACAGCGACAGTAGCAAGCACGAACAAATGTGGACCCAGAATGAAAAAATAAGAAATGTTTGGATTGCAGTTGAACTGACCATTCAAAGTGAGAAGAAAGCTCAGGTGGTTTTCATCAGTACTTGCAAAGACATTTGGAGCTGCGGTTCTGTTGGTCTTGATGACATTAAAGTGACTCCTGGTGACTGCTCACTGCTAGCAGCCTCTTCTCTGTTATTGCCGTCTCACTGTGACTTTGAATCTGGACTCTGTGGATTCTCTCAGGATAAAGTCGGAGACTCAGGTGACTGGTATCTGGCCAGAGGACCCACACCAACGTCCTACACAGGGCCGGGAGGAGACCACACCACTGGACTGGGTCATTATATGCACATTGAGGCATCAGTGATGCTGGCCGGTCATAAAGCGCGTCTCCTCTCCAGCACTCTCAGGGGCACTAGAGAAACACAGTGCCTGCAATTTTATTACCATATGTATGGTTCTGGGATTGGCCAGCTGAGTGTTTACCTCCAGACCGGACAAGAAAACGACGACAGACTGTTGTGGACGAGCCATGGAGAGCAGGGCATCTCCTGGCTCAGAGCGTCTCTAAACTACCACTATGACCAACAACACCAGattgtaTTTGAAGCCACCAGAGGAGCATCAGTAAGGAGTGACATTGCAGTTGATGATATTATTTTTGAAAGGGGACCGTGCAGAGAATATTCTGATCAGCACATCCCACATCTGAGCCTCTCTGGAAATAATAATGACATTCAGACGATGCATTTTAAGTAAAGACAGAAAGAGAAGAACGTTGAAGAGAGCAAAGTGATCGCATGTGAAAGTACAGCTGCAGAGCAGCGGTCTCCGAGGATGAAAGAGGACATGGATTGCATTATGATCAGATCTGATCACCTACAAACCTTCCTTCTGTATTTGACTATTGAACAAAAATGTTCATTGCTGATATGTTGTTTCTCATGCCTGTTTTACTTCATAAGAATCATAGTTCAAATTAAACAGTCACCTTAGGAAGCCTCCACACTTAATTTAATGACttacttgattttatttgttCTTCGGGAGCTTTTTTATGCCAAATAAAAGTACAAATGGGAGggattcttgttttgtgtttaaaattattactattattttgaaATTTTTGATCTTCATTATACACTCACCTGGAAACTTCATTTAGTATACCTA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091117-16 Predicted to be located in membrane. Orthologous to human MAMDC2 (MAM domain containing 2).

Ensembl:

ensembl_id ENSDART00000109231

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004955 lncRNA downstream 17499 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00004943 lncRNA downstream 562560 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 564810 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 564961 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006014 lncRNA downstream 613897 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00005752 lncRNA upstream 43877 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 264204 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 264204 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 264204 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00006015 lncRNA upstream 264204 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00004952 mRNA downstream 3883 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004951 mRNA downstream 3883 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004953 mRNA downstream 3917 15618098 ~ 15644940 (-) False XLOC_002664
TCONS_00004956 mRNA downstream 3953 15637190 ~ 15644904 (-) True XLOC_002664
TCONS_00004950 mRNA downstream 243293 15381972 ~ 15405564 (-) True XLOC_002663
TCONS_00004958 mRNA upstream 143003 15815865 ~ 15854743 (-) False XLOC_002667
TCONS_00004959 mRNA upstream 143015 15815877 ~ 15879569 (-) False XLOC_002667
TCONS_00004960 mRNA upstream 143933 15816795 ~ 15849027 (-) True XLOC_002667
TCONS_00004961 mRNA upstream 208447 15881309 ~ 15919839 (-) False XLOC_002668
TCONS_00004962 mRNA upstream 223056 15895918 ~ 15910974 (-) False XLOC_002668
TCONS_00004954 other downstream 29842 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 308525 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 708511 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 916458 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1160703 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 1404571 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1431436 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1472957 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1669503 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1820619 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04536971_04554186.mRNA True 2700 mRNA 0.50 16 CI01000304 4536971 ~ 4554186 (-)