RNA id: TCONS_00004951


Basic Information

Item Value
RNA id TCONS_00004951
length 3966
RNA type mRNA
GC content 0.47
exon number 24
gene id XLOC_002664
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15617741 ~ 15644974 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCCAGAAAAATATCATGTGACCACTGTCGTCCAATCACACAGCGACTTACCGACAACACAGGCGCGAAACGAAAGTGAATAGACTGTGCTGAACATCAACCAGAGTGACCGACCAGAAATGGAGCAGCCGCATAAGAGAAAGCGAAAAAGCCACGAATTGTCCAACTCACAGCCCTCCGATCGTGAACCTGCAACGTCCACCAGTGCAAATGCCCGAGAAGGAGATTTCATGGAGGGCGCAATCGTCCGCATCACCATGCATAACTTCCTCACGTACGATCACTCTGAAGTTTTCCCCGGACCCAAACTGAACATGATCGTTGGAGCCAACGGCACAGGGAAGTCCAGTATCGTGTGTGCCATCTGTCTGGGCCTGGCTGGAAAAACATCTGTCCTGGGCCGAGGAGACAAGGTTGGTCTGTATGTGAAGAGAGGGTGTCAAAGAGGCTCAGTTGAAATAGAGCTGTACAGGACACGTGGAAACCTGATAGTCACCAGAGAGATCCAGGTTGAGAACAATCAGTCGACATGGATGCTTAATAAAAAACACGCCAGTCAGAAGGCAGTGGAGGAGGCCGTAAGAGAGCTGCACATTCAGGTTGGGAACTTGTGTCAGTTCCTACCACAGGAAAAAGTCGGTGAGTTTGCTAAAATGAGTAATAGTGAACTTCTTGAAGCCACTGAGAAATCTGTCGGCCCACCAGAAATGTACGAATTTCACTGTGAGCTCAAGACATTTCGCACCAAAGAGAGAGATTTAgagAATGTGTGTAAGGAAAAAGGAAACTTCCTAGAGAAGGCCAGACAGAGGAATGAAAGAAACAAGCTGGATGTGGAGCGCTACTACATGAAGAAGCGGCATTTAGACAGGATCCAGATGCTTGAGAAGAAGAAACCCTGGGTGgaGTATGAGACGGCACGTAAAGAGCTGGAGGGGGTGAAGAAGGAAAGAGATGAAATGAAAAGGAAGCTTAGGTTCCTGAAGGAAGCTCAGGAGCCGCTGCTCAGAAAGATCCGCTCTGTGGAGAGTGAGCTGCAGCCCATCGAGCAGCAGATGAAGGAGATGACCAACCGTATCAAAGAGGCAACGCAGAAATGTAAGCAGAAACACGACCAGCTTGAACTGAAGAATAAAGAGGTTGATGACATCAAACAGGACATGAGTCTAAAGCAGACGGAGGAGGCGGACAGGCAGAAGCGGATTGGACACACGCAACTGATGATCAGAGATCTGCAAAAGGAGCTTCAGAACATGGGCACCATTGAGGACGTTACTCCTCAGATTGAGGCTATCAATGCAGAGCTGAGGAACATTCAGGAAGAAAGAGCCAGACTGGAGAGTGAGAGTCTGGACCTGCGCAGAGATAAAGATGAAATCACTGGAGAATTTGCGCGTTTGCAGAATCGCCTGAGGAGTCTGGATGACATGATGAAGATTAAAGAGGAGAAATTGCGCAGCCGCTTTCGTGACACATACACAGCCCTTGAGTGGCTGAGGAAAAATCGTGATCGTTATGAAGGAGTTGTCCATGAGCCCATGATGCTGGTGATAAATGTTCGTGATGCTCGGCATGCAAAATACATTGAGACTCACATTTCTGTCAATGACTTGAGAGCTTTCGTCTTCCAGAGACAGGATGATAACGACAAATTTATGAATGAGatgagagATACGCAGAGGCTGCGAGTTAACAGCATCATCGCTCCTACAGAGTCTTGCTCTAAACGACCACCGTCACGACCCATCGAGACCCTCAAgcCTTACGGCTTCATCTCGTACTTGCGAGAGATGTTTGATGCTCCTGAGGAGGTTATGAGTTATTTATGCCATCAGTACAGAGTTAACGATGTACCAATAGGAACAGAGAAGACCAAGGGCATGATTGAATCGGTGATCAAAGACCTTCAGTTGAGAACGATTTACACAGCGGAGGAGAGGTATAATGTGAAGAAGTCTGCTTACTCCAATAATGTGGTCTCCAGTAACTCGGCTCTGCGACCACCACAGTTCTTGACTACCACCATAGATGTAGAGGAGAGGCGACAGCTGGAGGAGCAGCTGAGGGCAGCAGAAAGGCAGAAGCAGAGCATTGATCAGCGGATGGCAGCCATCCGGGAGCAGCAAGCTAACCTGGACCGTCGTGATAATGAGCTGCGTGCTAATAAGAAGAAACTGTCTGATCTGAAAAGCAAGAAGAGACAACTGGAGCAGAAAATCAGCACAAAACAGGACAGcttGAGGCAGATGGAGCAGAATGAGATCAACTTGGTGGCAATCGAAGAGGAAGCGAATGCCAAGATTGCTGCTGTCAACAACAAGAAAGTGACCATAATGGGGGAGTATTTGAGTCACCTGCAGTCAAAGGCCAGGCTGAATATGGAGAAGGTGTATTTGGCTCTCCAGAGCGCAGGTCTCAGTGCTGAGAAAACCAAACTGGAGACGGACGTTCGAGAAAGTTCAGCTGAACTCAAGAGAGCAGAGGTAGACTATACCAAGCTGGACAAGATAAAGACCAATCTGTTGATGACTTGTAAGACCCTGATGAAACGGGCCAGTGAGATCTGTAACATGACTCCAGGAGAGACGGCCGTCCCGGAAGAACTACATGCAGCTTTCAGCTTGTTGCCTGAGACTCTGGATGAGATCGATGCCATGCTGAATGAGGAAAGAACCAGAGCTGAGTGTTTCACAGGCCTCAGTGATGCTGTGGTGGATGAATATAACAGGCGTGAGCAGGAGATTAAGAACTTGGAGAAGGAGCTGGACGATAAGACTAATGAACTGACAACCTATAGAAGAAACATTGCAGAGGCTAAAGAGCGCTGGCTGAATCCGCTGAAGAAGCTGGTGGAGCTGATCAATGTGCGCTTCAGTGATTTCTTTCAGTCTATGCAGTGTGCAGGAGAGGTGGATCTGCACTCAGAGAATGAGGAGGAGTACGATAAATATGGCATCCGCATCCAGGTGCAGTTCCGCAGAAACACACGGATGCACGAGCTCACGCCACACCATCAGAGTGGAGGAGAGCGCAGtgtcaccaccatgctttacCTCATGTCCCTGCAGGAGCTCAACCGCTGCCCCTTCAGAGTGGTGGACGAGATCAATCagGGAATGGATCCTGTCAACGAGAGACGCGTGTTTGACATTGTTGTGAGGGCGGCCTGTGGTGTGAACACGTCTCAGTATTTCTTCATCACACCTAAGctTCTCCAGAACCTGCAGTACGCCGAGCAGATGACCATCCTCTGTGTGCACAACGGCCCTCAAATGCTGCCGCCAAACAAGTGGAATGAAAAGGCTTTCATCCAGCGAGCCAGACGCAGAAACCGGACCTGAAGTTCCTCAACGCCTTCATCTGCCTGAAAATAGTAACCGTTTCTAGTTCACAtgtaatcaatcaataaatgcaaatgtttatttaaaaaaaaggtatttttccAAGTACAAGTGTTTGTTCTCAATAAAGGAATGTTAGGTTCAGATAAACCCTCAAGTTCATGACAGAATGATATGCTTAATGGAGCATTTGATATCCAGCATGCTGGTCAAACTATTAAAGCATCAACAGTTTTTAACCTAATAAAAGTGTTTCATTTAAATGGTACCTATTTTACtgcttttacaagatgtaagatcaGCATTTGGTGTCTCCAGATTGTGTCTGTGAAGCTTCAGCTAAAAATacccatcaaattatttattatagcctccagaatctgctcaTTTTGGTGTCTTAAGTATggtgttgctgtttttgttgcctgtgactttaaatgcaaatgagctgcttctccccgcccaccgttcccatgtgtctgcttctcatcatgcattacgtcagataaacagcagtcagtgacagagatgGATGCAGATGAAGCTtgaatacagctcattagtcaataatatcaggtaagtttatttgatgtatttgcggTGAattttattcaagcctttctga

Function

GO:

id name namespace
GO:0007062 sister chromatid cohesion biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006281 DNA repair biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-061013-288 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

Ensembl:

ensembl_id ENSDART00000122170

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004943 lncRNA downstream 531444 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 533694 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00005751 lncRNA downstream 533845 15083594 ~ 15083896 (-) True XLOC_002660
TCONS_00006013 lncRNA downstream 574993 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA downstream 582781 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00005752 lncRNA upstream 71765 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004964 lncRNA upstream 292092 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 292092 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 292092 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00006015 lncRNA upstream 292092 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00004950 mRNA downstream 212177 15381972 ~ 15405564 (-) True XLOC_002663
TCONS_00004946 mRNA downstream 277291 15321522 ~ 15340450 (-) False XLOC_002662
TCONS_00004945 mRNA downstream 277329 15321522 ~ 15340412 (-) False XLOC_002662
TCONS_00004957 mRNA upstream 3883 15648857 ~ 15672862 (-) True XLOC_002665
TCONS_00004958 mRNA upstream 170891 15815865 ~ 15854743 (-) False XLOC_002667
TCONS_00004959 mRNA upstream 170903 15815877 ~ 15879569 (-) False XLOC_002667
TCONS_00004960 mRNA upstream 171821 15816795 ~ 15849027 (-) True XLOC_002667
TCONS_00004961 mRNA upstream 236335 15881309 ~ 15919839 (-) False XLOC_002668
TCONS_00004948 other downstream 277409 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 677395 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 885342 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1129587 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004920 other downstream 1686045 13931569 ~ 13931696 (-) True XLOC_002648
TCONS_00004975 other upstream 1432459 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1459324 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1500845 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1697391 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1848507 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

//