RNA id: TCONS_00004960


Basic Information

Item Value
RNA id TCONS_00004960
length 3678
RNA type mRNA
GC content 0.53
exon number 23
gene id XLOC_002667
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 15815865 ~ 15879569 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAGACGGTCCTCTCGCTGCACAGGAAATGGGTGCACACCATGAAGGCCATCCGCATCCTCCAGGGCATCAACCCAGTCATGGAGGAGACTGTGTGGGAGCAGTACACTGTGACCCTACAGCGGGACTCCAAGATGGGCTTTGGCCTAGCGGTGTCTGGAGGACGGGACAATCCAAACGAAGAAAGTGGAGAAATGTCAATCGTCATATCTGATGTGCTGCAAGGGGGTCCAGCCGATGGCTTGCTGTTTGAAAATGACAGAGTGGTCCAGGTCAACACTGTGCCGATGGACGGTGTCCCACACTCCTTTGCAGTCCAGACTCTCCGCAAATGTGGCAAAGTTGCCAAAATTACTGTAAAGCGATGTAGAAAAATCCCTGTCAACCTGACCAAGCGTGCTGCATCCCCTGATGACCGTGTCTTCAGTGGCGACTACAACGATGATTATGACTATGAACAGGACCAGCACAGCATCTACAGTGGACGCAGCTACCCTAACCGTGATACTAGTTTAGAGCGTGAGCGCGGCGGCTATGCTGACGAGCGTGAACGGGACTATGATCGCAGTCGGGGGAGGAGCATGGAGCGCGGCGTGAGCCCTGATAGACAATACAGGCGGGACGGCAGCCGCGGACGAATGCTGGACAACGAGCGCTGCCCCGACCCCCGTTACAGAAGTGAAAATACCTTGGATCGCGACCGCAGTCCAGACCCCCGTTATCGAAGTGAACGCACGCTGGACCGCAACTACAGCCCAGAGCGAGGTCGCCGCTTTCGCAGCGAACACAACCTGGACCGAGAGCGAAGTCCAGACACACAATACCGCAGCGATCGCACACTGGACAGAACACACAGTCCAGATACACACTATAGGCCTGAACCTGCTCGGGGGTACAGCAGAGAGAATCTCACCAGTGACAATGAGCGCAGGAGGTATGGCTCACATCAGAACGAACCCATGAAGAAGAGCAACAGCCAAGACAGATTGGATCGTTCGCCTTCACCTGCACCACTCCGACACAATGCCTTGGAAAAGCCACTCAGTGTTACTCTCCTCAAAAACCGTCCCAATGATGaataTGGCCTTCGTCTAGGCAGTCAGTTGTTCATCAAAGAGATGACGAACACAGGCCTTGCATCCAGGGAAGGCAAACTACAAGAAGGAGACATTATTCTGAAAATCAACGGTACGGTCACAGAGAATCTGTCTCTGAGCGATGCAGGGAAGCTGATTGAGAAGTCTCGTGGAAAGCTGCAGCTGGTGGTGCAGAGGGATCGCAGTCAAGTGCTCATCCGCATCCCACCAATGGCAGACAGCGACTCGGAAATGGATGacaTCTCTGAGATCGAGTCGTACCGCTCATATTCTCCTCAGGAGGATCGGCGGAGTCATCACTCAGACCTCTCCTCACACTCCTCCAATGAGAGATTACAGGACAAAAACAGAGAAGAGCCTCCTAAAAGACTGGCTAAAATGGGAGCGATGCCCACTCCATTTGTATCAGCACCGGTGGATCTGCCACCTCCACCTGTAGAGAAAGAAGAGCCTCGCAGCGAGTCTCCAGctCCTCCTGTGGTAATTGCTGCTCCAAAAACTGTTCCAGTAAAAGCAAAACCTTTGCCAAAGGTTCCCTTGCTACCCAGTCCAGAAGAGCAGGAAATTTATGgGCCCAACACTGTGATGGTGCGCTTTGTGAAGGGTGAAAGCGTTGGTCTGCGTCTGGCTGGAGGAAATGATGTGGGCATTTTCATCGCCGGCGTTCAAGAGGACAGTCCTGCCGAGGTGGAGGGTCTGCGCACTGGAGACCAAATAGTCAAGGTGAATAACATGGATTTTCGAGGCATGGTCCGTGAAGATGCAGTTCTGTATTTACTGGAGATTCCCAAAGGAGAGGATGTGACCATTTTGGCTCAAAGCAAACCCGATGTGTATAAAGACATCCTGGGGTCTGGACGAGGTGATAACTTCTTCATCAGGACTCATTTTGAATATGAGAAAGAGCTTCCCCAGAGCCTGAACTTCTCTAGAGGAGAGGTTTTTAAAGTGGTGGACACCCTGTATGATGGCAAGCTGGGAAACTGGCTCGCCATCCGCATGGACAAAGACAATCAGCTCCTGGAAAAGGGCATCATACCCAGCAAGAGCAGGGCGGAGCAGATGGCAAATGTTCAGCATGCACAGAAAGGTGCTGGTAATGACAGAGGCGATTTCTGGAGGCTCAGAGGTCAAAGGGCAGCTAAGAAAAAAGACCTTCGCAAGAGCAGAGAGGATCTCAGTGCAGCTCCAGTCACCACACGCTTCCCGGCCTATGAGAGAGTGGTGCTGCGTGAAGCTGGCTTCAGGCGTCCAGTCGTGATTTTTGGCCCCATTTCAGATGCAGCCAACGAAAAACTTGCCAATGAACTTCCAAATGAGTTCACCATTGCAAAGACCGAACCAAAAGACGCAGGCTCAGAAAAGTCATCTGGCGTTGTGAGGCTAAACACCATTCGTCAGATCATCGAACagGATCTACATGCTCTGCTGGATGTCACTCCAAAGGCTGTAGACACCCTCAATTACACTCAGTGGTATCCCATTGTCATCTTCCTCAACCCAGACAGCAAGCAGGGGGTGAAGACCATGAGGAATCGCTTGGTGCCTGGATCCAACCGCAGCTCACGCAAACTTTACGAACAAGCGGTCAAACTGCGGAAGACATATGCGCATCTGTTCACagCTACCATTGATCTGAACTCTTCTCACGATGCCTGGTTTGGAAGCCTCAAAGACGCCGTACGAGAACAGCAAGATAAAGCTGTCTGGGTCTGTCAAAGCAAGctggaTGGCTCAGAGGAGGACCTGGATCTCCATGATGACCGTATGTCCTACCTGTCGGCCATGAGTGCAGATTACCTGAGCATGGACAGCCGTCTGACCAGCGACTATGAGGACACGGCGGACGAGGGCGGCGCATACACTGATAATGAGCTTGATGAGTCCACAGATGAGCCTCAGCCAATGTCTGCCATCAGCCGCTCATCTGAACCCGTCAGTGAGGAGAGGCACATGCCTGTTCCCCACGAGCGCTCAAAGAAACCATCGGGCAGAGACGTCCAGCGTGACCCCAGTCCTCCTCCGTCATTTGTCCCAGAACCCCCAAAGGTGCGCTCTGCTTCCCGTCCTGCAGACTCCAGGAGTTTTGACTCGCGCTCCAGCAGCACCATCAGCAGTGATGCGCCCATCAGCAACAAACCTCTTCCTCCGCCCGTCGCCCAGAAGCCCAGTTTCAATACGAGGTCGGCGGACGACACACCTTCTAATGACCCAGCAGATGACCCTGCCAACCGCACCTTCAGGGGAAAGGTGAAGGCCTTCGAGCAGATGGACCACCTTGCCAGAGCCAAACGTATGCTGGAGCTGCAGGAGGCCGAACAAGCCCGGCTGGAAATCTCTCAGAAACATCCAGATATTTATGCAGTTCCTAACAAGCCAAAACCAAACCAGAACAGACCACAACCAATTGGCTCCAGCTCAAACTCCGAGTCCCAGAGCTCCTCCAAAGCAATGTATTCAGAGAGAGGCTCACACTACCGGCACGATGATGATGACGAAGAGGAGTATCGCCGCCAGCTGGCGGACCAGACCCGGAGAGGATATTACAGCACACAGAAATACAATGACACAGAGCTctaa

Function

GO:

id name namespace
GO:0090557 establishment of endothelial intestinal barrier biological_process
GO:0098609 cell-cell adhesion biological_process
GO:1905605 positive regulation of blood-brain barrier permeability biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0050839 cell adhesion molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070925-2 Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in several processes, including establishment of endothelial intestinal barrier; positive regulation of blood-brain barrier permeability; and protein localization to cell-cell junction. Predicted to be located in membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; epidermis; nervous system; pronephros; and vasculature. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 51; disease of metabolism; and progressive familial intrahepatic cholestasis 4. Orthologous to human TJP2 (tight junction protein 2).

Ensembl:

ensembl_id ENSDART00000184682

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005752 lncRNA downstream 92691 15716739 ~ 15724104 (-) True XLOC_002666
TCONS_00004955 lncRNA downstream 185437 15622898 ~ 15631358 (-) False XLOC_002664
TCONS_00004943 lncRNA downstream 730498 15082410 ~ 15086297 (-) False XLOC_002660
TCONS_00004942 lncRNA downstream 732748 15082410 ~ 15084047 (-) False XLOC_002660
TCONS_00004964 lncRNA upstream 88039 15937066 ~ 15963981 (-) False XLOC_002668
TCONS_00005753 lncRNA upstream 88039 15937066 ~ 15963985 (-) False XLOC_002668
TCONS_00005754 lncRNA upstream 88039 15937066 ~ 15963986 (-) False XLOC_002668
TCONS_00006015 lncRNA upstream 88039 15937066 ~ 15964029 (-) False XLOC_002668
TCONS_00006016 lncRNA upstream 89886 15938913 ~ 15963985 (-) False XLOC_002668
TCONS_00004957 mRNA downstream 143933 15648857 ~ 15672862 (-) True XLOC_002665
TCONS_00004952 mRNA downstream 171821 15617741 ~ 15644974 (-) False XLOC_002664
TCONS_00004961 mRNA upstream 32282 15881309 ~ 15919839 (-) False XLOC_002668
TCONS_00004962 mRNA upstream 46891 15895918 ~ 15910974 (-) False XLOC_002668
TCONS_00004963 mRNA upstream 46961 15895988 ~ 15963903 (-) False XLOC_002668
TCONS_00004965 mRNA upstream 157878 16006905 ~ 16028082 (-) True XLOC_002669
TCONS_00004966 mRNA upstream 212628 16061655 ~ 16067194 (-) False XLOC_002670
TCONS_00004954 other downstream 197780 15618216 ~ 15619015 (-) False XLOC_002664
TCONS_00004948 other downstream 476463 15337310 ~ 15340332 (-) False XLOC_002662
TCONS_00004937 other downstream 876449 14937827 ~ 14940346 (-) True XLOC_002655
TCONS_00004928 other downstream 1084396 14732283 ~ 14732399 (-) True XLOC_002653
TCONS_00004922 other downstream 1328641 14326826 ~ 14488154 (-) False XLOC_002649
TCONS_00004975 other upstream 1228406 17077433 ~ 17083377 (-) False XLOC_002675
TCONS_00004978 other upstream 1255271 17104298 ~ 17132910 (-) True XLOC_002678
TCONS_00004980 other upstream 1296792 17145819 ~ 17156675 (-) True XLOC_002679
TCONS_00004991 other upstream 1493338 17342365 ~ 17342481 (-) True XLOC_002684
TCONS_00004997 other upstream 1644454 17493481 ~ 17501404 (-) True XLOC_002687

Expression Profile

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